Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21610 204 / 9e-68 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) AT1G67600 164 / 3e-52 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) AT1G24350 160 / 1e-50 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2.3) AT3G61770 109 / 2e-29 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) AT3G12685 73 / 4e-16 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G156000 [exp] 192 / 3e-63 AT3G21610 184 / 5e-60 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.002G226900 [exp] 189 / 4e-62 AT3G21610 218 / 2e-73 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.010G056600 [exp] 155 / 1e-48 AT1G67600 254 / 8e-88 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Potri.002G171300 [exp] 110 / 1e-29 AT3G61770 331 / 3e-114 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Potri.010G176100 [exp] 54 / 7e-09 AT3G12685 193 / 2e-61 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000883 [exp] 211 / 1e-70 AT3G21610 224 / 3e-76 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10003670 [exp] 205 / 4e-68 AT3G21610 219 / 1e-73 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10035299 [exp] 191 / 2e-62 AT3G21610 275 / 1e-95 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10030025 [exp] 164 / 4e-51 AT3G21610 243 / 6e-82 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10011373 [exp] 152 / 2e-47 AT1G67600 245 / 2e-84 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10006432 [exp] 151 / 5e-47 AT1G67600 245 / 3e-84 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10036984 [exp] 134 / 3e-41 AT1G24350 185 / 2e-61 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2.3) Lus10030253 [exp] 112 / 2e-32 AT3G61770 245 / 5e-83 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10014550 [exp] 56 / 1e-10 AT3G61770 115 / 4e-33 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10001841 [exp] 53 / 2e-08 AT3G12685 206 / 2e-66 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [poplar] [flax] pap2 PF02681 [poplar] [flax] DUF212 Divergent PAP2 family
Representative CDS sequence Show only first row Show all	>Potri.011G087100.1 pacid=42781669 polypeptide=Potri.011G087100.1.p locus=Potri.011G087100 ID=Potri.011G087100.1.v4.1 annot-version=v4.1 ATGGACGAAGTGATGACAGCTGCTGATGCATCGTCCAGATATCGATCAGCAACATCTCCACCCGCTAGTCTCCCCTCCAACATTCCTCTCCTTTCCGCCT TCCTTGCCTTTTCACTTGCCCAGTTCCTCAAGCTTTTCACCACCTGGTTCAAGGAGAAGAGATGGGATGCTAGAAGGATGCTTGGGTCAGGTGGAATGCC CTCATCCCATTCAGCAACCGTGACTGCTCTAGCAACCGCTATTGGTCTGCAAGAAGGAACTGGAGCACCAGCATTTGCTGTTGCATTGGTTTTGGCATGC GTTGTTATGTATGATGCAACTGGTGTTAGACTTCATGCTGGTCGCCAAGCTGAGTTACTAAATCAAATTGTCTGCGAGCTACCTCCGGAACACCCTGTCT CCAATGTTAGACCCCTACGGGATTCACTTGGTCACACTCCACTCCAGGTTGTTGCGGGTGCAGTGTTGGGGTGTATTATAGCTTTCCTCATGAGAAGTTC TAGCTAG
AA sequence Show only first row Show all	>Potri.011G087100.1 pacid=42781669 polypeptide=Potri.011G087100.1.p locus=Potri.011G087100 ID=Potri.011G087100.1.v4.1 annot-version=v4.1 MDEVMTAADASSRYRSATSPPASLPSNIPLLSAFLAFSLAQFLKLFTTWFKEKRWDARRMLGSGGMPSSHSATVTALATAIGLQEGTGAPAFAVALVLAC VVMYDATGVRLHAGRQAELLNQIVCELPPEHPVSNVRPLRDSLGHTPLQVVAGAVLGCIIAFLMRSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21610			Acid phosphatase/vanadium-depe...		Potri.011G087100 [exp]	0	1
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Potri.002G231700 [exp]	23.91	0.7892
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Potri.006G275300 [exp]	34.98	0.7663	FZF.2
AT5G11170			DEAD/DEAH box RNA helicase fam...		Potri.018G028600 [exp]	35.07	0.7787
AT3G06180			Ribosomal protein L34e superfa...		Potri.008G201700 [exp]	36.11	0.7751
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Potri.006G045800 [exp]	36.94	0.7828
AT1G36370		SHM7	serine hydroxymethyltransferas...		Potri.001G212000 [exp]	52.86	0.7660	SHMT9
AT2G40780			Nucleic acid-binding, OB-fold-...		Potri.019G061200 [exp]	60.79	0.7584
AT5G11170			DEAD/DEAH box RNA helicase fam...		Potri.006G253100 [exp]	66.61	0.7610
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Potri.002G044000 [exp]	66.96	0.7589
AT4G38130		ATHDA19, ATHD1,...	ARABIDOPSIS HISTONE DEACETYLAS...		Potri.009G170700 [exp]	76.13	0.7296	HDA902,RPD3.1

Compare expression of checked genes

Potri.011G087100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.