Plant FIBer expression Database

Pt-VTC2.1 (Potri.011G087200) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-VTC2.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G26850 633 / 0 VTC2 mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase
AT5G55120 615 / 0 VTC5 VITAMIN C DEFECTIVE 5, galactose-1-phosphate guanylyltransferase (GDP)s;GDP-D-glucose phosphorylases;quercetin 4'-O-glucosyltransferases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G355600
[exp]
781 / 0 AT4G26850 624 / 0.0 mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase
Potri.017G126100
[exp]
545 / 0 AT4G26850 547 / 0.0 mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009725
[exp]
706 / 0 AT4G26850 643 / 0.0 mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase
PFAM info
Representative CDS sequence
>Potri.011G087200.1 pacid=42780320 polypeptide=Potri.011G087200.1.p locus=Potri.011G087200 ID=Potri.011G087200.1.v4.1 annot-version=v4.1
ATGATGCTTAGGATCAAAAGGGTTCCTACTGTTGTTTCCAACTACCAGAAAGAGGAAGGTGAGGAGGGTTCTCGCCGCGGAGGGGGTTGCGGCCGCAATT
GCCTTCAAAATTGTTGCCTTCAAGGCGCACGCCTACCTTTATATACTTTCAAGAAAGTGGACAGGATTATCACAGAGCAGAAGGATGTGTTTGAACATGA
CAAGAGTGAGCCTCCAGTTGCCTTCCTCAATTCGCTCCTTCTCGGGGAGTGGGAGGACCGTATGCAGAGAGGGCTCTTTCGCTATGATGTCACCACCTGT
GAAACCAAGGTGATACCGGGTCGCAATGGTTTTATTGCTCAGCTGAATGAGGGCCGTCACTTGAAGAAGAGGCCAACTGAATTCCGTGTCGATAAGGTCC
TCCAGCCCTTCGATGGAAACAAATTTAACTTCACTAAAGTTGGTCAAGAAGAGATCCTCTTCCAGTTTGGAGAGAGTGAAGATGGGGAAGTCAAGTTCTT
CCCGGATGCCACTATTGATGCTGAGAATTCTCCAAGCGTGGTTGCCATCAACGTGAGCCCTATTGAATATGGGCATGTGCTGTTAATCCCACGTGTCCTG
GATTGCTTGCCTCAGAGGATTGATCGTGATAGCTTCTTGCTTGCACTTCACATGGCAGCTGAAGCTGGGGATCCATACTTCCGACTGGGTTACAATAGCT
TGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAGGCTTACTACTTGACTGTGCCTTTTCCGATTGAGAAGGCATCCACCAAGAAGATAACTACGTT
GGATGGTGGTGTGAAAATCTCTGAGCTTGTGAATTATCCTGTCAGAGGTCTCTTCTTTGAGGGTGGAAATGCCCTGCAAGATTTATCCAACACTGTCTCA
GATGCCTGCATTTGCCTTCAAGAAAACAACATACCTTACAATGTGCTCATTGCTGATTGTGGAAACCACATCTTTCTCCTTCCACAGTGTTATGCTGAGA
AGCAAGCTCTAGGGGAAGTGAGTTCTGAGCTTCTTGATACCCAAGTGAACCCTGCTGTGTGGGAAATCAGCGGCCATATGGTGTTGAAGAGGAAGAAAGA
CTATGAGGAGGCATCGGAAGAGAATGCTTGGAGGCTTCTTGCTGAGGTGTCTCTCTCCGAAGAGAGATTCCAAGAAGTGAATGCTCTCATCTTTAAAGCT
ATTTCCAACAGTGGTAATTGCAGTGGAACTGATTCTGAGAACGTGCTTGAGGATGCAAATGTTGAACATACGTCTCTTGAAGAAGTGAATGCCATTAATG
AAAACTCCCATTCAGCCATGGTTACTGGGAGTCCAGGATGTCTAGTTCTGCAGTGA
AA sequence
>Potri.011G087200.1 pacid=42780320 polypeptide=Potri.011G087200.1.p locus=Potri.011G087200 ID=Potri.011G087200.1.v4.1 annot-version=v4.1
MMLRIKRVPTVVSNYQKEEGEEGSRRGGGCGRNCLQNCCLQGARLPLYTFKKVDRIITEQKDVFEHDKSEPPVAFLNSLLLGEWEDRMQRGLFRYDVTTC
ETKVIPGRNGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEILFQFGESEDGEVKFFPDATIDAENSPSVVAINVSPIEYGHVLLIPRVL
DCLPQRIDRDSFLLALHMAAEAGDPYFRLGYNSLGAFATINHLHFQAYYLTVPFPIEKASTKKITTLDGGVKISELVNYPVRGLFFEGGNALQDLSNTVS
DACICLQENNIPYNVLIADCGNHIFLLPQCYAEKQALGEVSSELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAEVSLSEERFQEVNALIFKA
ISNSGNCSGTDSENVLEDANVEHTSLEEVNAINENSHSAMVTGSPGCLVLQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G26850 VTC2 mannose-1-phosphate guanylyltr... Potri.011G087200
[exp]
0 1 Pt-VTC2.1
AT3G11560 LETM1-like protein (.1.2.3.4) Potri.006G208300
[exp]
2.64 0.9264
AT2G29110 ATGLR2.8 glutamate receptor 2.8 (.1) Potri.018G011800
[exp]
6.70 0.9099
AT5G15070 Phosphoglycerate mutase-like f... Potri.017G076400
[exp]
10.39 0.8873
AT1G75170 Sec14p-like phosphatidylinosit... Potri.002G261000
[exp]
10.58 0.8869
AT5G36160 Tyrosine transaminase family p... Potri.017G013800
[exp]
15.19 0.9064
AT2G38290 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammo... Potri.019G023012
[exp]
15.36 0.9108
AT2G29110 ATGLR2.8 glutamate receptor 2.8 (.1) Potri.018G012000
[exp]
17.32 0.9148
AT3G24190 Protein kinase superfamily pro... Potri.001G050700
[exp]
20.04 0.9072
AT4G23340 2-oxoglutarate (2OG) and Fe(II... Potri.002G159500
[exp]
30.38 0.8684
AT2G29990 NDA2 alternative NAD(P)H dehydrogen... Potri.009G047100
[exp]
32.86 0.8867

Potri.011G087200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.