Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29980 578 / 0 Protein of unknown function, DUF642 (.1.2) AT2G34510 573 / 0 Protein of unknown function, DUF642 (.1) AT4G32460 365 / 6e-125 Protein of unknown function, DUF642 (.1.2) AT5G11420 355 / 5e-121 Protein of unknown function, DUF642 (.1) AT5G25460 348 / 3e-118 Protein of unknown function, DUF642 (.1) AT1G80240 333 / 2e-112 Protein of unknown function, DUF642 (.1) AT2G41810 312 / 4e-104 Protein of unknown function, DUF642 (.1) AT2G41800 306 / 5e-102 Protein of unknown function, DUF642 (.1) AT3G08030 305 / 3e-101 Protein of unknown function, DUF642 (.1.2) AT5G14150 142 / 1e-38 Protein of unknown function, DUF642 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G250100 [exp] 363 / 3e-124 AT5G11420 598 / 0.0 Protein of unknown function, DUF642 (.1) Potri.018G031100 [exp] 350 / 3e-118 AT5G11420 600 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050300 [exp] 336 / 2e-113 AT2G41810 530 / 0.0 Protein of unknown function, DUF642 (.1) Potri.003G059800 [exp] 334 / 2e-112 AT5G25460 513 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050400 [exp] 329 / 9e-111 AT2G41810 521 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G174400 [exp] 324 / 2e-108 AT5G25460 507 / 0.0 Protein of unknown function, DUF642 (.1) Potri.009G058800 [exp] 322 / 5e-108 AT3G08030 498 / 9e-178 Protein of unknown function, DUF642 (.1.2) Potri.016G056100 [exp] 319 / 6e-107 AT2G41810 520 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G263900 [exp] 311 / 9e-104 AT3G08030 515 / 0.0 Protein of unknown function, DUF642 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023314 [exp] 639 / 0 AT2G34510 608 / 0.0 Protein of unknown function, DUF642 (.1) Lus10038495 [exp] 618 / 0 AT2G34510 605 / 0.0 Protein of unknown function, DUF642 (.1) Lus10013112 [exp] 364 / 2e-124 AT5G11420 606 / 0.0 Protein of unknown function, DUF642 (.1) Lus10008080 [exp] 360 / 1e-122 AT5G11420 604 / 0.0 Protein of unknown function, DUF642 (.1) Lus10005474 [exp] 357 / 2e-121 AT5G11420 581 / 0.0 Protein of unknown function, DUF642 (.1) Lus10025753 [exp] 339 / 1e-114 AT5G11420 453 / 8e-160 Protein of unknown function, DUF642 (.1) Lus10035910 [exp] 338 / 8e-114 AT5G11420 452 / 9e-159 Protein of unknown function, DUF642 (.1) Lus10029501 [exp] 333 / 3e-112 AT3G08030 537 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10039602 [exp] 333 / 4e-112 AT3G08030 530 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10029502 [exp] 314 / 7e-105 AT3G08030 475 / 1e-168 Protein of unknown function, DUF642 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF04862 [poplar] [flax] DUF642 Protein of unknown function (DUF642)
Representative CDS sequence Show only first row Show all	>Potri.011G087500.1 pacid=42781652 polypeptide=Potri.011G087500.1.p locus=Potri.011G087500 ID=Potri.011G087500.1.v4.1 annot-version=v4.1 ATGTTTCAAAGCTCAACAAGAAGCAAATGGTTCACTTTGTTTATGCTCGTCTTTGCTCTTTTTGCTTCTGCAATACTTGGAGAAGATGGGTTGGTGACAA ACGGTGATTTTGAAACGCCACCAATCACTGGCTTCCCCAAAGACGAGGCCCTGGTTGAAGGGCCCACCGAAATTCCAGGGTGGAAAACAAACGGCACCGT AGAGCTGGTATCCTCCGGACAGAAACAAGGTGCGATGATCCTCATTGTACCACGAGGTGCACACGCAGTAAGATTGGGGAACGACGCTGATATCAGCCAG GAATTGACGGTCGAGAAGGGATCTGTATACTCGGTCACGTTCAGTGCGGCTCGCACGTGCGCGCAGCTGGAATCTCTAAACGTGTCAGTGCTACCTGCAT CACAGACCATAGACCTGCAGACATTGTATAATGTGCAAGGGTGGGACCCATACGCGTTGGCTTTTGAGGCACAGGAGGATAAAGTGAGGCTGGTTTTCTC GAATCCCGGCATGGAAGATGACCCTACTTGTGGGCCTATTATCGATGATATTGCGATCAAAAAGCTTTTCACTCCTGAGCGACCCAAAGACAATGCAGTA ATTAATGGTGATTATGAGGAAGGCCCCTGGATGTTTAATAACGTTTCACTCGGAGTCCTGCTCCCAACCAAACTGGATGAGGAAACGTCGTCGTTGCCCG GTTGGATTATCGAATCATACAGGGCTGTCCGCTACATAGACTCTTATCATTACTCCGTTCCACAAGGCAAGCGTGCCATTGAATTGCTCTCAGGCAAGGA AGGCATAATCTCACAGATGGTTGAAACAACACCCAGCAAGCCTTACACGATGTCGTTTGCCTTGGGCCATGCCGGGGACAAATGCAAGCAGCCACTTGCA GTCATGGCCTTCGCCGGTGATCAGGCCCAAAATATCCATTACACACCCGACTCCAACTCCACCTTCCAGGTTGCTAACCTCAACTTCACAGCCAAGGCCG ACAGGACCCGTATTGCATTTTATAGCGTGTACTACAATACCAGGAGTGATGATATGAGCTCGTTGTGTGGGCCAGTGGTGGACGATGTTCGGGTATGGTT TTCAGGGGCAAGAAGGATTGGATTTGGGGGGCTTGGTTTGGGGCTTGGGCTGTGGGTGTCTGTTTTGGCTCTGCTTTATTAA
AA sequence Show only first row Show all	>Potri.011G087500.1 pacid=42781652 polypeptide=Potri.011G087500.1.p locus=Potri.011G087500 ID=Potri.011G087500.1.v4.1 annot-version=v4.1 MFQSSTRSKWFTLFMLVFALFASAILGEDGLVTNGDFETPPITGFPKDEALVEGPTEIPGWKTNGTVELVSSGQKQGAMILIVPRGAHAVRLGNDADISQ ELTVEKGSVYSVTFSAARTCAQLESLNVSVLPASQTIDLQTLYNVQGWDPYALAFEAQEDKVRLVFSNPGMEDDPTCGPIIDDIAIKKLFTPERPKDNAV INGDYEEGPWMFNNVSLGVLLPTKLDEETSSLPGWIIESYRAVRYIDSYHYSVPQGKRAIELLSGKEGIISQMVETTPSKPYTMSFALGHAGDKCKQPLA VMAFAGDQAQNIHYTPDSNSTFQVANLNFTAKADRTRIAFYSVYYNTRSDDMSSLCGPVVDDVRVWFSGARRIGFGGLGLGLGLWVSVLALLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29980			Protein of unknown function, D...		Potri.011G087500 [exp]	0	1
AT5G07590			Transducin/WD40 repeat-like su...		Potri.003G151400 [exp]	2.23	0.8890
AT3G58690			Protein kinase superfamily pro...		Potri.014G143100 [exp]	4.00	0.8709
AT1G10380			Putative membrane lipoprotein ...		Potri.010G158500 [exp]	4.24	0.8656
AT2G34700			Pollen Ole e 1 allergen and ex...		Potri.011G053600 [exp]	4.47	0.8511
AT2G40815			Calcium-dependent lipid-bindin...		Potri.019G065500 [exp]	6.00	0.8546
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Potri.010G125800 [exp]	6.00	0.8628	XYL1.1
AT3G54000			unknown protein		Potri.010G195800 [exp]	6.48	0.8603
AT1G47740			PPPDE putative thiol peptidase...		Potri.009G113168 [exp]	6.63	0.8644
AT5G15080			Protein kinase superfamily pro...		Potri.006G066100 [exp]	7.48	0.8431
AT1G70550			Protein of Unknown Function (D...		Potri.008G188000 [exp]	7.54	0.8331

Compare expression of checked genes

Potri.011G087500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.