Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08680 238 / 5e-70 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 222 / 5e-64 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT2G36570 223 / 6e-64 Leucine-rich repeat protein kinase family protein (.1) AT1G64210 220 / 9e-64 Leucine-rich repeat protein kinase family protein (.1) AT3G02880 208 / 5e-59 Leucine-rich repeat protein kinase family protein (.1) AT5G53320 207 / 8e-59 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 208 / 1e-58 leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G31250 204 / 3e-57 Leucine-rich repeat protein kinase family protein (.1) AT5G16590 202 / 9e-57 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT5G24100 201 / 2e-56 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G073500 [exp] 244 / 3e-72 AT2G26730 341 / 1e-108 Leucine-rich repeat protein kinase family protein (.1) Potri.004G086100 [exp] 235 / 7e-69 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.015G035500 [exp] 233 / 5e-68 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1) Potri.019G131500 [exp] 229 / 1e-66 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 228 / 3e-66 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 228 / 5e-66 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G062100 [exp] 226 / 5e-65 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 223 / 2e-64 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G020600 [exp] 222 / 8e-64 AT2G36570 293 / 6e-90 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016590 [exp] 449 / 5e-153 AT2G36570 205 / 6e-59 Leucine-rich repeat protein kinase family protein (.1) Lus10034446 [exp] 223 / 5e-64 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 219 / 8e-63 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031350 [exp] 218 / 1e-62 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1) Lus10038828 [exp] 218 / 3e-62 AT4G23740 613 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027568 [exp] 217 / 3e-62 AT4G23740 652 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10039321 [exp] 216 / 9e-62 AT4G23740 649 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019113 [exp] 216 / 9e-62 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 216 / 1e-61 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10014943 [exp] 214 / 5e-61 AT4G23740 634 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.011G088000.1 pacid=42781460 polypeptide=Potri.011G088000.1.p locus=Potri.011G088000 ID=Potri.011G088000.1.v4.1 annot-version=v4.1 ATGTGGAGGAGGAGGAATTGCTATCTGCTATTGAAGGCCCTGGCACACATCACCGTGTTTTTCTTCATCACAGCATGTTCAGGAGGTGAGTTGTCCGAAA CTGAGTCTTTCTTCACTTTCATGAGAGCCATTGATCCCCAAAATGTGCTGAGAATCAGCTGGAGTGGGATAGTGCCACATCCTTGCTCGTATAGGTGGCG GGGAGTCAAGTGCAATTTTCAGCCTCCTGCTATAACACAAATCAGGCTTGACAGGCAGAACTTTACTGGGACAATTGATGCAGACTCCCTTTGTGGGCTC CAACACCTGCAAGTCCTGAGCTTAGCAAAGAATCACATCCAAGGAAATATTCCTCACTCCATATTGAATTGCAGAAGCCTGACCTATTTAAATCTAAGCA GTAATTTTCTGACTGGGAGGGTGCCTGTGCCTCTATTCAAGTTGAAATATCTCCGGACCTTGGATATCTCTAACAATTATTTAACTGTAATTATTCCTCG TCCCGAACTGGAATTCAAGCATCTAAATCATTATTCTATGAAACATAGTGCAGTGAAGATGTACAATCTTCAAAAATTGGCAATAGTGGCAGACTCCGTG GCCCTAAATAGCACTGACGCTGGTTCCGTCGAACATCCTGCAGACCCATCTAATGGAAGCAAGCCTGGTTCTGGCAAAAGGAAATGGTACGACAAAGCCA TATACGTCGTCCCATTAGCTTTTGGCATTGTATTTCTCTCTGTATTAGCTTATTTTGTGAATAAGAGGTTCTCTGATTCGGCCAAAGAGAGGGAGATTCT GAAATCTCTGGCACATTCTCCTCAGAAAACTCCTCCACCTGTGCCTCAAGAAGACTTGAAGCCTAAAGAAAGATGCTCAGAGCTCGTTTTCTTTGTTGAA GAGAAAGAAAGATTCGGATTGGATGACCTCTTTGAAGCTACCGCTGACTTACAAAGTCAGACCCCTAGCAGCAGTCTGTACAAGGTGAAGCTTGGTAATA TCGTATACGCCGTCAAAAGATTGAAGAAATTGCAGGTATCATTTGAGGAGTTTGGCCAAACAATGAGGCAGATTGGGAATTTGAAGCACCCAAACATTCT ACCCCTTGTTGGTTACAATTCCACTGATGAGGAAAAACTTCTAATATACAAGTATCAAAGCAGTGGAAGCCTGCTAAACCTGCTAGAGGACTACATTGAA GGCAAGAGGGAGTTCCCATGGAAACATCGGCTGTCAATAGCAATTGGCATTGCAAGGGGTTTGGACTTCATATACAGGAATCCTATTGAGCATGAGATCA AACCTCATGGGAACATTAAGCTTTCAAATATCCTGCTGGATGAAAATCAAGAACCACTAATTAGTGAGTACGGATTTTCAACATTTTTGGACCCCAAGAG AGTTTGGTCCTTTTCCTCCAATGGTTATACAGCCCCTGAGAAAATCTTGTCGGAACAAGGCGATGTTTTCAGTTTTGGAATAATTATGCTTGAGTTACTA ACAGGAAAAACTGTGGAGAAGAGTGGGATAGACCTTCCTAAATGGGTCAGATCCATAGTAAGGGAGGAATGGACAGGAGAAGTTTTCGACAAGGAGTTCA ATCACGCTGCGAGGCAATATGCATTCCCTTTGCTCATTATCTCTCTCAAATGTGTATCAAAATCACCGGAAGAGCGCCCACCTATGGGAGAAGTGATGGA GAAGATAGAGGAAGTAGTGAATGCAAATGAGGAATTCACTATTTCTTCTATGGGCTCAATACTATCCAGTCCACCAGAGTGGTGCATACTTCACTCTGTC ATACCTGAGACTTGGGATACTCCTGGCTCAAATTATTGA
AA sequence Show only first row Show all	>Potri.011G088000.1 pacid=42781460 polypeptide=Potri.011G088000.1.p locus=Potri.011G088000 ID=Potri.011G088000.1.v4.1 annot-version=v4.1 MWRRRNCYLLLKALAHITVFFFITACSGGELSETESFFTFMRAIDPQNVLRISWSGIVPHPCSYRWRGVKCNFQPPAITQIRLDRQNFTGTIDADSLCGL QHLQVLSLAKNHIQGNIPHSILNCRSLTYLNLSSNFLTGRVPVPLFKLKYLRTLDISNNYLTVIIPRPELEFKHLNHYSMKHSAVKMYNLQKLAIVADSV ALNSTDAGSVEHPADPSNGSKPGSGKRKWYDKAIYVVPLAFGIVFLSVLAYFVNKRFSDSAKEREILKSLAHSPQKTPPPVPQEDLKPKERCSELVFFVE EKERFGLDDLFEATADLQSQTPSSSLYKVKLGNIVYAVKRLKKLQVSFEEFGQTMRQIGNLKHPNILPLVGYNSTDEEKLLIYKYQSSGSLLNLLEDYIE GKREFPWKHRLSIAIGIARGLDFIYRNPIEHEIKPHGNIKLSNILLDENQEPLISEYGFSTFLDPKRVWSFSSNGYTAPEKILSEQGDVFSFGIIMLELL TGKTVEKSGIDLPKWVRSIVREEWTGEVFDKEFNHAARQYAFPLLIISLKCVSKSPEERPPMGEVMEKIEEVVNANEEFTISSMGSILSSPPEWCILHSV IPETWDTPGSNY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08680			Leucine-rich repeat protein ki...		Potri.011G088000 [exp]	0	1
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.008G032200 [exp]	1.41	0.9993
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.001G326000 [exp]	1.73	0.9991
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Potri.012G133200 [exp]	2.00	0.9993
					Potri.002G158600 [exp]	3.00	0.9986
					Potri.003G126200 [exp]	3.46	0.9989
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.010G104800 [exp]	4.89	0.9987
AT3G17675			Cupredoxin superfamily protein...		Potri.013G061300 [exp]	5.29	0.9987
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.005G216000 [exp]	5.47	0.9981	3
AT1G59740			Major facilitator superfamily ...		Potri.004G064100 [exp]	5.47	0.9987
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.018G033500 [exp]	6.92	0.9986	PtrAMT4-2

Compare expression of checked genes

Potri.011G088000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.