Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55530 419 / 7e-145 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT1G50570 369 / 1e-125 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT5G12300 194 / 9e-58 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G361100 [exp] 646 / 0 AT5G55530 431 / 2e-149 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Potri.009G070400 [exp] 284 / 1e-91 AT5G12300 283 / 2e-92 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G275800 [exp] 216 / 2e-65 AT5G12300 285 / 7e-93 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G209800 [exp] 43 / 0.0003 AT3G16510 137 / 8e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G024200 [exp] 42 / 0.0007 AT3G16510 135 / 5e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003765 [exp] 479 / 3e-168 AT5G55530 451 / 1e-157 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10032578 [exp] 380 / 4e-130 AT5G55530 395 / 2e-136 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10043169 [exp] 275 / 9e-90 AT5G55530 274 / 4e-90 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10009692 [exp] 184 / 3e-54 AT5G12300 264 / 4e-86 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10016592 [exp] 160 / 1e-45 AT5G55530 152 / 5e-43 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10036036 [exp] 128 / 4e-33 AT5G12300 192 / 9e-58 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10001346 [exp] 67 / 2e-12 AT5G12300 72 / 9e-15 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009693 [exp] 52 / 1e-08 AT5G12300 71 / 4e-16 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10006523 [exp] 45 / 5e-05 AT3G16510 147 / 1e-41 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Potri.011G088400.6 pacid=42780505 polypeptide=Potri.011G088400.6.p locus=Potri.011G088400 ID=Potri.011G088400.6.v4.1 annot-version=v4.1 ATGGATTCCCCTCAATCTGTTGTGTCACCATTCAAGACCTCTGTTGGCTTTGAGACAGAGAAGCAGAAGTATGATTATCCAGTTCAGAGCACTGGCAGCT TCTCCAAGGGAATTGAGATCCACAGAAACGATGCTGTGGTTGGCAATCTCGAAGATTTTGTTGGTGTAGTTGAGGTTTACATACACCAGGCTAGGGACAT CCAAAACATATGCATTTACCACAAGCAAGATGTTTATGCAAAGTTTTGCCTGACTAGCGATCCCGAGCACACTGTCTCCACCAAAATCATCAATGGTGGT GGGAGGAATCCAGTCTTCAATGACAGTCTGCGGCTCAATGTTAAGACTGTTGATTCCTCCCTTAAATGTGAGGTATTCATGATGAGCAGGGTGAGGAATT ATCTGGAGGATCAGCTGTTAGGTTTCGCTCTGGTGCCTTTGTCCGAAGTACTAATCAATAATGGGAATTTGGACAAAGAGTTCTCTCTTTCTTCAACTGA TTTGTTCTACTCTCCCGCGGGGTTTGTTCAACTATCTCTATCATACAGTGGAGCTTCACCAGAGGTAATGGCGATTCCAGCAATACCCACTGCTTTAGCT GCAAATGGAACTATTCAGGATTCAGAGATACAGGAATCACTTCCTTGTGAATTCGATAAGATTGAGTTCCCGGATCCAAAGGTTGTGAATGAAAACCAGA TGATGGTCTCTGAGTATTTTGGAATTCCATGTTCCAGTCTGGATTCTGAAGCCTCTGAGAGCTTGGCCACCTCTGATACTGAAAATTATCTCAGTTCAGA AAATGGAGTTCATGTCGTGGAAAGCTTCTCAGCTGCCACTTCCGATTCAATTCAAGTTCCGAAGCTTGGCTCTCCTCCAAGCAGTGTGTCAACTAACGGT GTTTCTTCTCCTTCTGTTGATGCAAGTTCAGAAACCTCTGACAGCCCAGCAGCTTCTAAAACACCGAATCTGGACCATGTCTCAGACCGTAAAGAGAGAG AGAGTACAAATGTCAGAGATGGTGAGACTGATTCCTCTGGTGGAGCATCAAATGAGAAAATTGCCAAACCTGTTATTACAGTAAACATTGAGCCGGAAAC AAATATGGTTCAGCAGGACATAGTAGACATGTACATGAAAAGCATGCAACAATTCACAGAGTCACTGGCCAAGATGAAGCTTCCTTTGGACATTGAAAGT GGACCAACTAGTTCAGGAAGTTCGAGCTCTGATAAGAATGTGCAGGCATCAAAGAACACTGGTTCCCGTGTGTTTTATGGGAGTAGAGCTTTCTTCTGA
AA sequence Show only first row Show all	>Potri.011G088400.6 pacid=42780505 polypeptide=Potri.011G088400.6.p locus=Potri.011G088400 ID=Potri.011G088400.6.v4.1 annot-version=v4.1 MDSPQSVVSPFKTSVGFETEKQKYDYPVQSTGSFSKGIEIHRNDAVVGNLEDFVGVVEVYIHQARDIQNICIYHKQDVYAKFCLTSDPEHTVSTKIINGG GRNPVFNDSLRLNVKTVDSSLKCEVFMMSRVRNYLEDQLLGFALVPLSEVLINNGNLDKEFSLSSTDLFYSPAGFVQLSLSYSGASPEVMAIPAIPTALA ANGTIQDSEIQESLPCEFDKIEFPDPKVVNENQMMVSEYFGIPCSSLDSEASESLATSDTENYLSSENGVHVVESFSAATSDSIQVPKLGSPPSSVSTNG VSSPSVDASSETSDSPAASKTPNLDHVSDRKERESTNVRDGETDSSGGASNEKIAKPVITVNIEPETNMVQQDIVDMYMKSMQQFTESLAKMKLPLDIES GPTSSGSSSSDKNVQASKNTGSRVFYGSRAFF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55530			Calcium-dependent lipid-bindin...		Potri.011G088400 [exp]	0	1
AT4G24230		ACBP3	acyl-CoA-binding domain 3 (.1....		Potri.002G120200 [exp]	1.00	0.8689
					Potri.007G005400 [exp]	2.44	0.8455
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Potri.005G192300 [exp]	6.48	0.8299
AT5G42570			B-cell receptor-associated 31-...		Potri.014G154800 [exp]	8.36	0.7636
AT4G06599			ubiquitin family protein (.1)		Potri.003G011300 [exp]	9.00	0.8063
AT4G29820		CFIM-25, ATCFIM...	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.006G146400 [exp]	10.24	0.8268
AT2G03500	GARP		Homeodomain-like superfamily p...		Potri.006G155200 [exp]	11.40	0.8053
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Potri.003G048100 [exp]	12.48	0.8036
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Potri.015G132600 [exp]	13.22	0.7717
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Potri.014G194700 [exp]	13.41	0.8243

Compare expression of checked genes

Potri.011G088400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.