Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55510 252 / 1e-85 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT4G26670 249 / 2e-84 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT3G10110 57 / 4e-10 MEE67 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT1G18320 56 / 9e-10 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT5G24650 44 / 3e-05 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT3G49560 41 / 0.0002 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G360300 [exp] 344 / 9e-122 AT5G55510 254 / 2e-86 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.001G281200 [exp] 56 / 1e-09 AT3G10110 205 / 4e-68 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.009G076400 [exp] 54 / 5e-09 AT3G10110 194 / 1e-63 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.012G004600 [exp] 44 / 4e-05 AT5G24650 262 / 2e-87 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.015G000600 [exp] 43 / 6e-05 AT5G24650 300 / 6e-103 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032577 [exp] 224 / 2e-74 AT4G26670 221 / 1e-73 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10043170 [exp] 223 / 4e-74 AT4G26670 220 / 5e-73 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10026848 [exp] 56 / 1e-09 AT3G10110 224 / 5e-76 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10020223 [exp] 55 / 2e-09 AT3G10110 229 / 8e-78 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10032913 [exp] 44 / 5e-05 AT5G24650 234 / 6e-77 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10015593 [exp] 40 / 0.0005 AT5G24650 218 / 3e-70 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10005289 [exp] 40 / 0.0007 AT5G24650 303 / 1e-103 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [poplar] [flax] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Potri.011G088500.1 pacid=42781678 polypeptide=Potri.011G088500.1.p locus=Potri.011G088500 ID=Potri.011G088500.1.v4.1 annot-version=v4.1 ATGGCGACGGCGAATTCTCCAGATGCCAGCAACAACAACAATACTGATTCCGATGTCGAAGACACAAGCCCTAACCCTAATCTTTCAATTAATAAAAACA ATGGATTTCTTATATCTTCTGCTGAGTCCAGTTCCCCTTCCGTCTGCCTCCTCCGCTTCGCTGGTGACTCCGCTGCTGGGGCCTTTATGGGCTCCATCTT CGGCTACGGTTCTGGTTTGATTAAGAGGAAAGGTTTCAAAGGATCCTTTGGGGAAGCAGGATCTTGTGCCAAGACATTTGCAGTTCTATCCGGAGTACAC AGTTTAGTTGTCTGCTTTTTGAAGAGGCTGCGAGGGAAGGATGATGTTATTAATGCTGGAGTAGCTGGATGCTGTACTGGTCTTGCTTTGAGTTTTCCAG GCGCACCTCAGGCACTTCTGCAGAGTTGCCTTACATTTGGAGCATTCTCATTCATAATTGAAGGGCTGAACAAGCAGCAACCAGCGCTGGCTCACTCATT TTCTTCAAGGAACAAACGTGACTATCACAATGTAACCTGTCCCGTAGCTCTCCATCTTGCGGTCCCTCTTCCAGATGAACTAAAAAGGGCCTTCTCCTTT TTCTGCAAGTCCCTGCGGAAGCCCAAGAGTGGAAATTTTCCTGCTGTTTCCTGA
AA sequence Show only first row Show all	>Potri.011G088500.1 pacid=42781678 polypeptide=Potri.011G088500.1.p locus=Potri.011G088500 ID=Potri.011G088500.1.v4.1 annot-version=v4.1 MATANSPDASNNNNTDSDVEDTSPNPNLSINKNNGFLISSAESSSPSVCLLRFAGDSAAGAFMGSIFGYGSGLIKRKGFKGSFGEAGSCAKTFAVLSGVH SLVVCFLKRLRGKDDVINAGVAGCCTGLALSFPGAPQALLQSCLTFGAFSFIIEGLNKQQPALAHSFSSRNKRDYHNVTCPVALHLAVPLPDELKRAFSF FCKSLRKPKSGNFPAVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55510			Mitochondrial import inner mem...		Potri.011G088500 [exp]	0	1
AT2G39725			LYR family of Fe/S cluster bio...		Potri.001G018100 [exp]	2.82	0.7961
AT3G47590			alpha/beta-Hydrolases superfam...		Potri.018G068000 [exp]	3.00	0.8051
AT2G26840			unknown protein		Potri.009G068300 [exp]	3.87	0.7895
AT2G21250			NAD(P)-linked oxidoreductase s...		Potri.009G125100 [exp]	5.09	0.8206	S6PDH.2
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Potri.008G138400 [exp]	7.74	0.7511	EXGT.4
AT3G43660			Vacuolar iron transporter (VIT...		Potri.001G456000 [exp]	10.00	0.7712
AT4G33460		ABCI10, ATNAP13...	embryo defective 2751, ATP-bin...		Potri.005G062800 [exp]	13.41	0.8109
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Potri.009G129500 [exp]	14.00	0.7647	TIM.2
AT4G17370			Oxidoreductase family protein ...		Potri.003G078500 [exp]	14.69	0.7868
AT2G33255			Haloacid dehalogenase-like hyd...		Potri.010G063700 [exp]	19.74	0.7306

Compare expression of checked genes

Potri.011G088500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.