Plant FIBer expression Database

Potri.011G089300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G55060 770 / 0 unknown protein
AT5G58510 149 / 6e-37 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G076000
[exp]
130 / 7e-31 AT5G58510 1237 / 0.0 unknown protein
Potri.001G280832
[exp]
59 / 1e-09 AT5G58510 164 / 3e-47 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040061
[exp]
855 / 0 AT5G55060 753 / 0.0 unknown protein
Lus10043118
[exp]
708 / 0 AT5G55060 630 / 0.0 unknown protein
Lus10032631
[exp]
707 / 0 AT5G55060 643 / 0.0 unknown protein
Lus10000118
[exp]
353 / 1e-117 AT5G55060 319 / 1e-106 unknown protein
Lus10021546
[exp]
199 / 4e-58 AT5G55060 170 / 3e-48 unknown protein
Lus10031287
[exp]
144 / 1e-35 AT5G58510 1122 / 0.0 unknown protein
Lus10031857
[exp]
105 / 2e-24 AT5G58510 468 / 2e-158 unknown protein
Lus10020371
[exp]
59 / 8e-09 AT4G26680 241 / 3e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF13890 Rab3-GTPase_cat Rab3 GTPase-activating protein catalytic subunit
Representative CDS sequence
>Potri.011G089300.1 pacid=42781985 polypeptide=Potri.011G089300.1.p locus=Potri.011G089300 ID=Potri.011G089300.1.v4.1 annot-version=v4.1
ATGGAGTCGCCTTCTTTTGTATCCAAAGCAAGGACCGCCATCCATTCCGCTGCTGCTAAAGCGGAGCAAGTTTTCACTGACATTAAATCAGACTTTATAT
CCGATCGAGAAGGGCCAGACTCAGATAAGATATCGCCAAAGGAATCGATAAAAGAATCGGGAGAAAAGTCGTCTCCGCGCAATGACAGCGAGTCAAAGAA
TAAGAATGAAGGGAAGCAGCAACATATGAGGTGGAGACCTGGAAAAAAAGGGACTAAGCTGGATTGGCAAGATAGATTCAAGAATACTATAAGATTAGGA
GGGAAAAGAGGACCTGACAACAACAACAAAGCTGAAAACTCAACCATGGCTCTTCCATGTTACGATGAAAATCTGTACTTACTCAACATGAAAAACGAGG
AGGAGGCCAAGGGCTCACATGTTTCTTCCATAGTAGAAAGATTAAATGCCACCAACCCAGATACAATTCCTCCAATATCTGCCTTGAAGCAATTGGCTGT
AGCTGTGGATTCTGGAAAAAAGTTTAAGTCAGTGAAAGACATTTTGGCATCATCTGGAGCTTCCTCGCCAATTATGGAGAGGGCAAGCTTAAGCCTTGCT
GCAGTTAAGTCATTAATGCTTCGAGACAAGGAGGATAAACTTACATCTGAGTTTGGTAATGATGAGAAGCTGGAATCCTTGATAAAATCATTGTTTGATG
CAGAGGGAAACTTTCTCAGCCGGAACATGAGCCTGGTTTTGGAACCACCATTATTGCCCAGAGATATTCATGGTGCTCCACCTGAGGGCTTTCTTACTAA
ACTATCTGAAGTAATTGGAAGTTTTACAACCCTGCGAAAAATGGCATTGTTCTGGTGCAAAATTGTTACTGAGATAAGAAGACTTTGGTCTGAAGAGCTG
TATATACCTGGCATCCCTCTAGATGAGATTCCAGATTTAAATTCCTGTCGTTTGTACCAGCAACTTCAGGTTGTGAATTCTTGTGTTTCTAGAAAAAAGT
GGCGCACTCTGGCCACTCAATCAATAGAATCAGTAATGAGGCATGCTGGTTCATGTTCTGAAGAATCAGCTGATCTCCAGGGCACAGTCACCTCACACCA
TATCTTATATGCTAGAATAAGCACTGGAGAACTTGTTCTTCGATTGGGAGCTGATAGACCTGCTGATAATTTAACCATGTTGGAAACCGGAGAACCTGTA
TACTCACCGATCACCCAGGAAGGACCTTTGCTTACTGAAGATCTTATCAAAGAAACAGAAGAGTTTGTGCTGCGAACTGGAAGTGTTGGCGCTGGGTGTT
CTCAACTCCTCTCTGACATGCAGGCCTTCAAGGCTGCAAATCCTGGTTGTATCTTAGAAGATTTTGTCAGATGGCACTCTCCCCCTGACTGGACAGAAGG
TGAGCCAAGTGATGAGGCTCAAGAGTATGTTGATCAAGTTGATTCATCTTCTACGAGAGGCCAACTAAGCAGTCGAATGCAAAAGGAAGGTAACTTGTGG
CGTGAACTGTGGGAAACAGCCAAACCTGTACCAGCTGTTAAACAGGCTCCCCTCTTTGATGTGGATTTGGCTGTGGAGGGTATTCTGAATGACTTAGAAG
ACATCCCACCTGTTGAGCTTTTTGAACAACTGTTTATTTCTTTGCTTGGTTTGGGATTTGTAATGGCCGAGGCTAAACTCTCCTGTAACAATGATTTGTT
AAAGATATTTTTGGAATGCAAAGACTATGTTGTTGTCACTTGTCAAGGAAAAATCTGGAGTGATAAAATGGATGATCTCTGCCAGGTGTACGAAACAGTA
GAGACAATGTTATTGAACCCAGAAGAAGTCCTAAAGGCAGCAAGGCAGATGGAAGAAACCAATACTGTGGGTGAACCAAGACGTAGGTTGAAGATGCTTG
GCCTGAGCTTTGGAAGCAAGGAAAGAAACTCGAGAAACCCATCAAAAGATGAGAAGAACTCAGAGGAAAATTCATCTCGCCAACCATTCTCTACCTTCTT
TGATGGCAAGTCTTCTTTATTCTTGAAAAAGCCTCCAAGGCCTGAGAGTGTGTCCTTTGGCGACAAAGCTGCATACCAAGATGAAAACGAAAATGATTGG
ACAATTGTTTAA
AA sequence
>Potri.011G089300.1 pacid=42781985 polypeptide=Potri.011G089300.1.p locus=Potri.011G089300 ID=Potri.011G089300.1.v4.1 annot-version=v4.1
MESPSFVSKARTAIHSAAAKAEQVFTDIKSDFISDREGPDSDKISPKESIKESGEKSSPRNDSESKNKNEGKQQHMRWRPGKKGTKLDWQDRFKNTIRLG
GKRGPDNNNKAENSTMALPCYDENLYLLNMKNEEEAKGSHVSSIVERLNATNPDTIPPISALKQLAVAVDSGKKFKSVKDILASSGASSPIMERASLSLA
AVKSLMLRDKEDKLTSEFGNDEKLESLIKSLFDAEGNFLSRNMSLVLEPPLLPRDIHGAPPEGFLTKLSEVIGSFTTLRKMALFWCKIVTEIRRLWSEEL
YIPGIPLDEIPDLNSCRLYQQLQVVNSCVSRKKWRTLATQSIESVMRHAGSCSEESADLQGTVTSHHILYARISTGELVLRLGADRPADNLTMLETGEPV
YSPITQEGPLLTEDLIKETEEFVLRTGSVGAGCSQLLSDMQAFKAANPGCILEDFVRWHSPPDWTEGEPSDEAQEYVDQVDSSSTRGQLSSRMQKEGNLW
RELWETAKPVPAVKQAPLFDVDLAVEGILNDLEDIPPVELFEQLFISLLGLGFVMAEAKLSCNNDLLKIFLECKDYVVVTCQGKIWSDKMDDLCQVYETV
ETMLLNPEEVLKAARQMEETNTVGEPRRRLKMLGLSFGSKERNSRNPSKDEKNSEENSSRQPFSTFFDGKSSLFLKKPPRPESVSFGDKAAYQDENENDW
TIV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G55060 unknown protein Potri.011G089300
[exp]
0 1
AT4G00800 SETH5 transducin family protein / WD... Potri.014G105601
[exp]
1.73 0.8243
AT1G77600 ARM repeat superfamily protein... Potri.002G084300
[exp]
2.00 0.7862
AT5G05660 EBI, ATNFXL2 NFX1-like 2, EARLY BIRD, Arabi... Potri.010G188700
[exp]
2.00 0.7575
AT4G07990 Chaperone DnaJ-domain superfam... Potri.005G146600
[exp]
2.23 0.7561
AT3G45630 RNA binding (RRM/RBD/RNP motif... Potri.009G026200
[exp]
6.48 0.7499
AT1G08600 ATRX, CHR20 P-loop containing nucleoside t... Potri.013G048500
[exp]
10.09 0.7559 CHR923
AT5G56890 Protein kinase superfamily pro... Potri.018G068100
[exp]
12.64 0.7375
AT3G20720 unknown protein Potri.011G132800
[exp]
13.67 0.7314
AT5G10790 UBP22 ubiquitin-specific protease 22... Potri.018G123200
[exp]
14.42 0.6542
AT5G64070 PI-4KBETA1, PI4... phosphatidylinositol 4-OH kina... Potri.005G059000
[exp]
16.73 0.7120

Potri.011G089300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.