Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20475 1263 / 0 ATMSH5 MUTS-homologue 5 (.1) AT3G18524 181 / 4e-47 ATMSH2, MSH2 MUTS homolog 2 (.1) AT4G02070 171 / 1e-43 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT4G25540 163 / 4e-41 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT4G17380 139 / 1e-33 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) AT3G24495 109 / 3e-24 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT5G54090 71 / 2e-12 DNA mismatch repair protein MutS, type 2 (.1) AT3G24320 70 / 5e-12 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) AT1G65070 62 / 2e-09 DNA mismatch repair protein MutS, type 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G060000 [exp] 188 / 2e-49 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1) Potri.014G121701 [exp] 186 / 1e-48 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.015G142900 [exp] 169 / 6e-43 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Potri.001G156200 [exp] 118 / 3e-27 AT4G17380 1226 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Potri.006G159200 [exp] 116 / 2e-26 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.006G156314 [exp] 116 / 2e-26 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.008G191051 [exp] 81 / 1e-16 AT4G02070 294 / 1e-91 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.010G065000 [exp] 66 / 8e-11 AT3G24320 1670 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Potri.012G005000 [exp] 65 / 2e-10 AT5G54090 847 / 0.0 DNA mismatch repair protein MutS, type 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021544 [exp] 554 / 0 AT3G20475 554 / 0.0 MUTS-homologue 5 (.1) Lus10021545 [exp] 531 / 0 AT3G20475 494 / 2e-170 MUTS-homologue 5 (.1) Lus10042967 [exp] 187 / 5e-49 AT3G18524 1479 / 0.0 MUTS homolog 2 (.1) Lus10032469 [exp] 172 / 4e-44 AT3G18524 1449 / 0.0 MUTS homolog 2 (.1) Lus10010010 [exp] 168 / 1e-42 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10005743 [exp] 154 / 2e-38 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Lus10027452 [exp] 144 / 3e-37 AT4G25540 447 / 1e-148 homolog of DNA mismatch repair protein MSH3 (.1) Lus10028966 [exp] 106 / 5e-24 AT4G17380 413 / 3e-137 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Lus10017724 [exp] 105 / 6e-23 AT3G24495 1267 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10007489 [exp] 98 / 1e-20 AT4G17380 1205 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00488 [poplar] [flax] MutS_V MutS domain V CL0023 [poplar] [flax] PF05190 [poplar] [flax] MutS_IV MutS family domain IV CL0023 [poplar] [flax] PF05192 [poplar] [flax] MutS_III MutS domain III
Representative CDS sequence Show only first row Show all	>Potri.011G089500.3 pacid=42781101 polypeptide=Potri.011G089500.3.p locus=Potri.011G089500 ID=Potri.011G089500.3.v4.1 annot-version=v4.1 ATGGAGGAAATAGACGAAACGGAAGCCCAACCTCAGGTCTATATGGCATGCATCCTACATGGCCATCGGGTTGGGATTTCTTACTATGATTCCAGTATTC GCCAACTGCATGTGCTTGAAGTTTGGGAAGATGGAAGTTCAGACTTCCCCCTAATTGATCTGGTAAAATATCAGGCGAAGCCTTTGAATATTTACACAAG CACTAAATGTGAAGAGTCCTTCTTATCTGCTTTACAACGAAGTGATGGCACAACTGAGGCTCCTATGGTGAAACTCGTAAAAAGTTCAATATTCAGCTAT GAGCAAGCCTGGCACAGATTGATTTACCTTCGAGTGACAGGAATGGATGATGGGCTAAATATCAAGGAGAGGGTTTCATATCTGAGTTCCATGATGGACA TAGGAAGTGATGTTCAAGTTCGAGCAAGTGGAGGTCTTCTTGCCATATTAGAAAGTGAAAGGATTGTAGATACCCTTGAGCAAAAGGAATATGGAAATGC ATCAATTACTATCGATTCTATCGTGGAAATTTCACTAAACAAATTTCTTAAACTTGATGCAGCAGCTCATGAAGCATTGCAGATTTTTCAAATCGACAAA CATCCAAGCCATATGGGCATTGGCAGGGCAAAAGAAGGGTTCTCTGTGTTTGGCATGATGAATAAGTGTGTGACGCCCATTGGTAAACATCTTCTGAGAA ACTGGTTCCTGAGGCCTTTGCTGGATGTGGAAAATTTGAATGGTCGACTCAATGCTATTTCATTCTTTCTTTGTTCCGAAGAACTGATGGTTTCTTTGCG AGAAACATTGAAGTCTGTCAAGGACATTAAGCGTATACTCAGAAAGTTCGACTCACCAAGCTCCCTGTCTACTGTTGGTGACTGGACAGCCTTTCTGAAG AGTGTTTGTGCGCTCTTGCATTTGGGAAAGATATTTGAAGTAGGAATTTCTGAAAATCTTCAAGAGCATGCTAAGTACTTAAATCTGAACATTGTTGAAC AGGCTTGTTCATGCATCACAACAGAGCTGGCTTATGTCTATGAATTGGTGATTGGTGTTATTGATGTTAATAGAAGTAAAGAGAAGGGTTACGGGACAAT AGTGAAAGAAGGTTTCTGTGATGAGTTGGATGAGCTTAGGCAAATCTATGAAGAACTTCCAGATTTTCTGCACAAGGTTACTTTATTGGAGCTTGCACAA CTACCCCATTTGGGTAAAGAGAAGCTCGTTCCTTGTATTGTTTACATACATCAAATAGGGTACTTGCTGTGTATTTTTGAAGAGAAACTTGAAGAAACCT CACTGTTGAAGCCTCAAGATTTTGAATTTATGTTTTTCGATGTTGATGGAGAGACTAAAAGATATTTCTATCGTACTCCAAAGACAAGAGAATTGGATGA ACTTCTGGGAGACATTTACCACAAGATACTTGATATGGAAAGGGCAATCACTAGGGACTTGGTTTCTCATGTGCTTCTCTTTTCTGACCATCTGCTTAAG GCTATAAATTTTGCGGCTGAACTTGATTGCATTTTGTCACTGGCCATAGTTGCTCATCAAAACAATTACGTGAGGCCTATTTTGACTGAAGAAAACTTGC TTGACATTCAAAATGGAAGACATGTTTTGCAGGAAATGACAGTAGACACATTTATTCCTAATGATACAAAGATTCTTCATGATGAAAGGATCATTATCAT CACAGGTCCAAATTATTCCGGGAAGAGTATATATATAAAGCAGGTTGCTTTAATTGTTTTCCTTTCTCACATCGGAAGTTTTGTACCAGCAGATGCTGCC ACTGTGGGATTGACTGATAGGATATTCTGTGCAACTGGAAGCAAGCTTATGACTGCAGAACAATCAACATTTATGATAGATCTGCATCAAGTAGGACTGA TGCTAAGGCAAACAACTTCACGATCTTTGTGTCTGTTGGATGAATTTGGTAAAGGTACTTTAACTGAAGATGGCATTGGTCTCCTTGGTGGAACTGTAAA TTACTTTGTTGCATGTGATGACCCTCCAAAGGTTCTGATGTCCACTCATTTGACTGAGTTATTTAATGACGGTTGCTTACCAGAGTCTGAGAAGGTGAAA TTTTTCACCATGAGTTTGCTGAGACCTGACAACAACTCTACGGACATCAAGGACATTGTGTTTCTCTATCGGTTAGTTCCTGGACATGCACTTCTTAGCT ATGGACTCCATTGTGCTCTGCTAGCCGGCGTCCCTGAGGAAGTTATTAAGAGAGCAGCATTCATATTGGATACCGTCGGGAGCAGCAATTATGTTGAGCG ATTGTGCAATGAGAATTTATCAGCCCAGGATCAACTAAACAAGGAGACGGTTGACCGGATGCTGGAATTTGATGTTTTCAAGGGAGACATCAATCTCTTC TTCCAGGATATATTTCCTTGTTAA
AA sequence Show only first row Show all	>Potri.011G089500.3 pacid=42781101 polypeptide=Potri.011G089500.3.p locus=Potri.011G089500 ID=Potri.011G089500.3.v4.1 annot-version=v4.1 MEEIDETEAQPQVYMACILHGHRVGISYYDSSIRQLHVLEVWEDGSSDFPLIDLVKYQAKPLNIYTSTKCEESFLSALQRSDGTTEAPMVKLVKSSIFSY EQAWHRLIYLRVTGMDDGLNIKERVSYLSSMMDIGSDVQVRASGGLLAILESERIVDTLEQKEYGNASITIDSIVEISLNKFLKLDAAAHEALQIFQIDK HPSHMGIGRAKEGFSVFGMMNKCVTPIGKHLLRNWFLRPLLDVENLNGRLNAISFFLCSEELMVSLRETLKSVKDIKRILRKFDSPSSLSTVGDWTAFLK SVCALLHLGKIFEVGISENLQEHAKYLNLNIVEQACSCITTELAYVYELVIGVIDVNRSKEKGYGTIVKEGFCDELDELRQIYEELPDFLHKVTLLELAQ LPHLGKEKLVPCIVYIHQIGYLLCIFEEKLEETSLLKPQDFEFMFFDVDGETKRYFYRTPKTRELDELLGDIYHKILDMERAITRDLVSHVLLFSDHLLK AINFAAELDCILSLAIVAHQNNYVRPILTEENLLDIQNGRHVLQEMTVDTFIPNDTKILHDERIIIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAA TVGLTDRIFCATGSKLMTAEQSTFMIDLHQVGLMLRQTTSRSLCLLDEFGKGTLTEDGIGLLGGTVNYFVACDDPPKVLMSTHLTELFNDGCLPESEKVK FFTMSLLRPDNNSTDIKDIVFLYRLVPGHALLSYGLHCALLAGVPEEVIKRAAFILDTVGSSNYVERLCNENLSAQDQLNKETVDRMLEFDVFKGDINLF FQDIFPC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20475		ATMSH5	MUTS-homologue 5 (.1)		Potri.011G089500 [exp]	0	1
AT1G01020		ARV1	Arv1-like protein (.1.2)		Potri.002G181700 [exp]	1.00	0.8688
AT4G26310			elongation factor P (EF-P) fam...		Potri.001G004300 [exp]	2.64	0.8146
AT1G16650			S-adenosyl-L-methionine-depend...		Potri.007G065300 [exp]	3.46	0.8487
AT1G51130			Nse4, component of Smc5/6 DNA ...		Potri.016G046802 [exp]	4.89	0.8311
					Potri.010G031250 [exp]	10.09	0.8153
AT5G22920			CHY-type/CTCHY-type/RING-type ...		Potri.006G121801 [exp]	10.24	0.7690
					Potri.001G014050 [exp]	14.49	0.7199
AT2G23093			Major facilitator superfamily ...		Potri.007G052700 [exp]	15.49	0.7640
AT1G04420			NAD(P)-linked oxidoreductase s...		Potri.015G042100 [exp]	15.90	0.7530
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Potri.018G046200 [exp]	18.33	0.7154

Compare expression of checked genes

Potri.011G089500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.