Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 232 / 2e-73 SGNH hydrolase-type esterase superfamily protein (.1) AT3G50400 227 / 3e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G08460 223 / 1e-69 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 219 / 2e-68 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 218 / 1e-67 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G15720 216 / 2e-67 GLIP7 GDSL-motif lipase 7 (.1) AT1G74460 215 / 9e-67 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 212 / 1e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G42990 211 / 1e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G104600 [exp] 241 / 5e-77 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G180400 [exp] 241 / 5e-77 AT4G28780 200 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G104900 [exp] 237 / 6e-75 AT5G55050 209 / 7e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.012G068700 [exp] 232 / 3e-73 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.017G130100 [exp] 231 / 3e-73 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.019G067600 [exp] 229 / 2e-72 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G086700 [exp] 229 / 2e-72 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.008G104700 [exp] 229 / 6e-72 AT2G23540 280 / 1e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G064500 [exp] 228 / 7e-72 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021540 [exp] 447 / 1e-157 AT5G55050 357 / 5e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10040064 [exp] 321 / 1e-109 AT5G55050 259 / 2e-85 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023979 [exp] 298 / 3e-99 AT5G55050 229 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025105 [exp] 298 / 4e-99 AT5G55050 233 / 2e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025104 [exp] 264 / 8e-86 AT5G55050 211 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10021543 [exp] 258 / 3e-85 AT5G55050 180 / 6e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023980 [exp] 261 / 1e-84 AT5G55050 215 / 1e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10019095 [exp] 238 / 1e-75 AT1G74460 550 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016918 [exp] 234 / 7e-74 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039152 [exp] 233 / 2e-73 AT1G71250 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.011G089700.5 pacid=42780984 polypeptide=Potri.011G089700.5.p locus=Potri.011G089700 ID=Potri.011G089700.5.v4.1 annot-version=v4.1 ATGGGCAACAAGTCATTTCTTCCGAGTTTCTTGGTTGGTTTTGCCCTTGTCCTGAGCCTCAAATTCGCCAACGCTCAAATGGTGCCAGCCATTTTTGTTT TTGGTGACTCCCTGGTAGATGTGGGCAACAACAATTACCTCCCAGTGTCGGTTGCCAAAGCAGATTTCCCTCACAACGGCATCGATTTTCCTACAAAGAA AGCTACAGGAAGGTTTAGTAATGGGAAGAACGCAGCGGATTTCCTCGCTCAGAAAGTGGGCTTACCTACTTCACCGCCATACCTCTCCGTCTCGCCACAG AATACCTCCTCCTTTATGACCGGTGTCAGCTTCGCTTCTGGTGGTGCGGGAATCTTTAATGGCACAGATCGAACTTTGGGCCAAGCTATACCACTCACTA AACAAGTTGGCAACTATGAATCAGTATACGGCAAACTGATCCAACGGCTGGGATTGTCTGGCGCACAGAATCGCCTGTCTAAATCACTCTTTGTCATTGT CATTGGTAGCAATGATATTTTCGATTACTCCGGTTCGTCTGATCTCCAAAAGAAAAGCACCCCACAACAATACGTGGATTCGATGGTTCTTACAATCAAA GGCCTGCTTAAGAGATTGCACACTTCTGGTGCACGTAAATTTGTATTTGCTGGCATTGGGCCACTTGGCTGCATTCCATCACAAAGGATTAAGAACCAAA CAGATCATGGATGCAACGAGGGCAGTAATCTCATGGCTGTTGCGTACAATAAAGGGCTAAACTCGATATTGCAGGAATTGAAATCAAATCTCAATGCCAT ATCCTATTCCTATTTCGACACCTACGCCTTGATGCACAATATCATTCAAAACCCAGCAACCTATGGGTTTACCGAGGTTGAAGCTGCTTGTTGTGGGCGT GGGAAATTGAACGCCCAGATTCCATGTCTGCCCATTTCAAAATATTGCTCCAATAGGAGAGATCATGTTTTCTGGGATTTGTATCATCCTACAGAGACTA CTGCCAGCATTCTTGTTGATGCTATTTTCAATGGACCACTACAATATACATTCCCCATGAATGTGAGGCAGCTTGTGACAGTTTAA
AA sequence Show only first row Show all	>Potri.011G089700.5 pacid=42780984 polypeptide=Potri.011G089700.5.p locus=Potri.011G089700 ID=Potri.011G089700.5.v4.1 annot-version=v4.1 MGNKSFLPSFLVGFALVLSLKFANAQMVPAIFVFGDSLVDVGNNNYLPVSVAKADFPHNGIDFPTKKATGRFSNGKNAADFLAQKVGLPTSPPYLSVSPQ NTSSFMTGVSFASGGAGIFNGTDRTLGQAIPLTKQVGNYESVYGKLIQRLGLSGAQNRLSKSLFVIVIGSNDIFDYSGSSDLQKKSTPQQYVDSMVLTIK GLLKRLHTSGARKFVFAGIGPLGCIPSQRIKNQTDHGCNEGSNLMAVAYNKGLNSILQELKSNLNAISYSYFDTYALMHNIIQNPATYGFTEVEAACCGR GKLNAQIPCLPISKYCSNRRDHVFWDLYHPTETTASILVDAIFNGPLQYTFPMNVRQLVTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Potri.011G089700 [exp]	0	1
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Potri.010G035900 [exp]	4.24	0.9089
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G172900 [exp]	6.70	0.9028
AT4G17940			Tetratricopeptide repeat (TPR)...		Potri.002G256900 [exp]	10.29	0.9135
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G173200 [exp]	11.00	0.9010
AT3G18950			Transducin/WD40 repeat-like su...		Potri.004G148400 [exp]	16.37	0.9076
AT5G12180		CPK17	calcium-dependent protein kina...		Potri.009G069200 [exp]	18.13	0.9050	CPK17.1
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Potri.012G044900 [exp]	18.97	0.9053
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Potri.002G012800 [exp]	19.36	0.8940	Ptr4CL20
AT2G01670		ATNUDT17	nudix hydrolase homolog 17 (.1...		Potri.017G131000 [exp]	21.54	0.8606
AT5G16340			AMP-dependent synthetase and l...		Potri.013G096200 [exp]	23.83	0.9040

Compare expression of checked genes

Potri.011G089700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.