Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30460 613 / 0 C3HZnF CPSF30, ATCPSF30 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) AT4G11970 141 / 8e-37 YTH family protein (.1.2.3) AT1G27960 69 / 7e-12 ECT9 evolutionarily conserved C-terminal region 9 (.1) AT5G58190 67 / 2e-11 ECT10 evolutionarily conserved C-terminal region 10 (.1.2) AT1G55500 65 / 1e-10 ECT4 evolutionarily conserved C-terminal region 4 (.1.2.3) AT3G13060 65 / 1e-10 ECT5 evolutionarily conserved C-terminal region 5 (.1.2) AT1G09810 64 / 3e-10 ECT11 evolutionarily conserved C-terminal region 11 (.1) AT1G79270 63 / 5e-10 ECT8 evolutionarily conserved C-terminal region 8 (.1) AT3G17330 62 / 6e-10 ECT6 evolutionarily conserved C-terminal region 6 (.1.2) AT3G13460 62 / 1e-09 ECT2 evolutionarily conserved C-terminal region 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G357800 [exp] 913 / 0 AT1G30460 602 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Potri.001G113500 [exp] 147 / 3e-38 AT4G11970 398 / 5e-138 YTH family protein (.1.2.3) Potri.014G001000 [exp] 70 / 3e-12 AT3G13060 756 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.003G222700 [exp] 69 / 5e-12 AT3G13460 520 / 4e-178 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.007G002800 [exp] 69 / 9e-12 AT3G13060 732 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.001G056100 [exp] 68 / 1e-11 AT3G13060 431 / 5e-144 evolutionarily conserved C-terminal region 5 (.1.2) Potri.001G002000 [exp] 66 / 6e-11 AT3G13460 546 / 0.0 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.010G175500 [exp] 63 / 4e-10 AT1G79270 418 / 2e-140 evolutionarily conserved C-terminal region 8 (.1) Potri.008G080800 [exp] 63 / 6e-10 AT1G79270 424 / 2e-142 evolutionarily conserved C-terminal region 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023254 [exp] 678 / 0 AT1G30460 688 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Lus10008853 [exp] 528 / 2e-176 AT1G30460 563 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Lus10006706 [exp] 147 / 3e-39 AT4G11970 335 / 1e-114 YTH family protein (.1.2.3) Lus10007048 [exp] 147 / 8e-39 AT4G11970 335 / 1e-113 YTH family protein (.1.2.3) Lus10027582 [exp] 74 / 3e-13 AT5G58190 417 / 6e-140 evolutionarily conserved C-terminal region 10 (.1.2) Lus10034792 [exp] 73 / 3e-13 AT3G13060 646 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10033335 [exp] 73 / 5e-13 AT3G13060 653 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10037028 [exp] 72 / 1e-12 AT3G13060 415 / 6e-138 evolutionarily conserved C-terminal region 5 (.1.2) Lus10015778 [exp] 71 / 1e-12 AT3G13060 360 / 5e-120 evolutionarily conserved C-terminal region 5 (.1.2) Lus10037365 [exp] 71 / 2e-12 AT1G09810 323 / 7e-105 evolutionarily conserved C-terminal region 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [poplar] [flax] PUA PF04146 [poplar] [flax] YTH YT521-B-like domain
Representative CDS sequence Show only first row Show all	>Potri.011G089901.1 pacid=42780634 polypeptide=Potri.011G089901.1.p locus=Potri.011G089901 ID=Potri.011G089901.1.v4.1 annot-version=v4.1 ATGGAGGACCCAGAGGGGGTTTTAAGCTTCGACTTCGAGGGCGGCCTCGACTCGGGGCCCACGAACCCTAGCGCCTCCATGGCAGCGATCCCATCTGACA ATCAGGGATCCGCAATGGCAGCTGCGCCCAACACCGCAACCACCGGCGCCAGCACCAGTAACACCACCACCAACAACAGCAGCGACTCTGGTGCGGCGGA CATGCAGGCGGGGCGACGGAGCTTCCGGCAGACTGTATGTCGGCACTGGCTTCGAAGCCTTTGTATGAAAGGCGACGCCTGCGGATTCCTTCACCAATAC GACAAGTCTAGAATGCCTGTATGTCGGTTTTTTAGACTTTATGGAGAGTGCAGGGAGCAGGATTGCGTTTACAAGCACACCAATGAAGATATCAAGGAGT GCAATATGTACAAGCTGGGGTTTTGTCCCAATGGTCCAGACTGCAGGTATAGGCATGCAAAGTTGCCTGGACCTCCACCTCCGGTTGTAGAAGCTGTTCA AAAGACTCAGCAATTGAATTCTTACAATTATGGAAACTCTAACAAATTTTTTCAACAACGGACTGCTGGTGTTCCCCAACAGATAGAAAAGTCTCCCATT ACCATCATAAAACCTTCAGGAATGGAATCTGCTAATTTGCAGCAGCAGCAGCAGCCACAGACACAGACACAGGCACAGGCACCAAATCTTCCAAATGGCC AGCAACAGCCTAATCCATTGAACAGAATTGCAACGACCTTACCTCAAGGAATATCTAGGTACTTCATTGTTAAGAGCTGCAACCTTGAAAATTTGGAGTT ATCTGTGCAGCAAGGAGTATGGGCAACACAAAGGAGCAATGAACCTAAACTGAATGAAGCTTTTGACTCTGCTGAAAATGTAATCTTGATTTTCTCAGTA AACCGGACTCGGCATTTCCAGGGTTGTGCAAAGATGACATCCAAAATTGGTGCTTCTGTTGGTGGAGGGAATTGGAAATATGCACACGGAACTGCACATT ATGGGAGGAATTTCTCAGTCAAATGGTTGAAGTTGTGTGAACTGTCCTTCCACAAAACTCGTCACTTGAGAAACCCGTTCAATGAGAACTTACCAGTGAA GATTAGTAGAGATTGTCAGGAGCTAGAACCCTCTATTGGTGAGCAATTGGCGTCCTTACTTTATCTGGAGCCAGATAGCGACCTCATGGCAATCTCAGTT GCAGCTGAAGCAAAACGAGAAGAGGAAAAAGAAAAAGGAGTCAATCCTGACAGTGGTGGTGAAAACCCTGACATTGTCCCATTTGAGGACAATGAAGAAG AGGAGGAGGAAGAAAGTGAAGAGGAGGTGGAAGCCTTCGGGCATCCTCTTGGAGCAGCAGCTCAAGGCAGAGGGAGAGGTAGAGGAATCATGTGGCCTCC TCACATTCCAATTGCCCGTGGGGCAAGACCCATCCCCGGCATGAGAGCTTTCCCCCCCATGATGATGGGTGCTGATGGTTTTTCATACGGAGCTGTACCT GATAGCTTCGGAATGCCAGATCTCTTTGGTGTGGCTCCCCGTGGATTCGCCCCATATGGTCCGAGGTTTTCTGGTGATTTTACTGGTGCTACATCTGGCA TGATGTTTCCTGGGCGGCCTTCCCAGCCAGGAGCTATGTTTCCAGCTGGTGGATTTGGGATGATGATGGGTTCAGGACGTGCTCCGTTTATGGGGGGAAT GGGTCCCACTGCATCAAATCCTCTTCGAGGCCCTCGGCCCGGTGGCATGTTTGCACCACTTCTCGCATCATCCTCCCAGAACAATAACCGGTCTTTTAAG AGAGATCAGAGAGCAGCACCCAGTGATCGAATTGACAGACATAGTATAGAATCAGATCTGGTTAGGGGTGCAGCTGGGGAATCAAATGATGAGACAAGAT ACCCGCAGGAAACATACAAGGCTTCCCATGAAGATCAATTTGGTGCTGTAAATAGCAATAGAAACGATGAGAGTGAAAGTGAGGATGAGGCACCTAGACG GTCAAGGCACGGGGAGGGGAAGAAGAAGCGGCGAGGATCAGAAGGAGATGCTAATCCTGGCTCGGATCACAAACAGTAA
AA sequence Show only first row Show all	>Potri.011G089901.1 pacid=42780634 polypeptide=Potri.011G089901.1.p locus=Potri.011G089901 ID=Potri.011G089901.1.v4.1 annot-version=v4.1 MEDPEGVLSFDFEGGLDSGPTNPSASMAAIPSDNQGSAMAAAPNTATTGASTSNTTTNNSSDSGAADMQAGRRSFRQTVCRHWLRSLCMKGDACGFLHQY DKSRMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVVEAVQKTQQLNSYNYGNSNKFFQQRTAGVPQQIEKSPI TIIKPSGMESANLQQQQQPQTQTQAQAPNLPNGQQQPNPLNRIATTLPQGISRYFIVKSCNLENLELSVQQGVWATQRSNEPKLNEAFDSAENVILIFSV NRTRHFQGCAKMTSKIGASVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPFNENLPVKISRDCQELEPSIGEQLASLLYLEPDSDLMAISV AAEAKREEEKEKGVNPDSGGENPDIVPFEDNEEEEEEESEEEVEAFGHPLGAAAQGRGRGRGIMWPPHIPIARGARPIPGMRAFPPMMMGADGFSYGAVP DSFGMPDLFGVAPRGFAPYGPRFSGDFTGATSGMMFPGRPSQPGAMFPAGGFGMMMGSGRAPFMGGMGPTASNPLRGPRPGGMFAPLLASSSQNNNRSFK RDQRAAPSDRIDRHSIESDLVRGAAGESNDETRYPQETYKASHEDQFGAVNSNRNDESESEDEAPRRSRHGEGKKKRRGSEGDANPGSDHKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Potri.011G089901 [exp]	0	1
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.013G018700 [exp]	2.64	0.9123
AT3G57990			unknown protein		Potri.016G046900 [exp]	3.74	0.9122
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Potri.002G149800 [exp]	5.29	0.8951
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.005G026800 [exp]	6.24	0.9054
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.018G086100 [exp]	7.93	0.8770
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Potri.001G327000 [exp]	10.24	0.8850
AT1G61040		VIP5	vernalization independence 5, ...		Potri.004G039500 [exp]	10.67	0.8625
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Potri.001G169900 [exp]	10.95	0.8773
AT5G41950			Tetratricopeptide repeat (TPR)...		Potri.011G050600 [exp]	11.13	0.8343
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.005G116400 [exp]	11.22	0.8697

Compare expression of checked genes

Potri.011G089901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.