Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34680 836 / 0 AIR9 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G357700 [exp] 988 / 0 AT2G34680 2236 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.011G090200 [exp] 93 / 2e-19 AT2G34680 1307 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038534 [exp] 874 / 0 AT2G34680 1378 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Lus10023270 [exp] 775 / 0 AT2G34680 1368 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G090150.1 pacid=42782340 polypeptide=Potri.011G090150.1.p locus=Potri.011G090150 ID=Potri.011G090150.1.v4.1 annot-version=v4.1 ATGAAAGGAAGCCCACGGACCATATTATCTGATGTGATTGTACCTGCTGATCCAGTGGGATTGGAACTTGTGATTCCTAATTGCTACGAGGACAAGGAGG CCATCCCACAAAAAACATACTTCGGTGGACAGGAAGGTGCTGGAGAGTACATTTGGTTTAGAACAAGGGACAAGCTAAATAAATCTGAATTGTTGGATAT ATCAAATGCTGGTGATGATGATCTTATATGTGGTAAAACCTTGGCATATACTCCATCAATTGAAGATGTTGGAGCTTATTTGGCTCTGTACTGGCTGCCT ACTCGTGCAGATGGCAAGTGTGGAAAGCCTTTAGTCACAATTTCCAACTCTCCAGTTAACCCTGCTCTTCCAGTAGTTTCTAATGTTCATGTGAAGGAGC TGTCTTTGGGTGTTTATGCTGGAGAAGGAAAATATTTTGGTGGGCATGAGGGATTGAGCCTCTTCAGCTGGTATAGAGAGACAAATGAGGGAACAATCAT TCTTATTAATGGGGCTAACTCTAGAACGTACGAAGTCACAGATTTGGATTACAATTGCTGCTTATTGTTTGGGTACACACCTGTTCGTTCAGATTCAGTA GTAGGTGAGCTTAAGTTGTCCGAGCCAACTAACATCATTCTCCCAGAGCTTCCACAAGTGGAAATGGTTGCTCTCACAGGAAAGGCAATTGAAGGTGATG TACTTACTGCTGTTGAAGTGATCCCGAAGAGTGAAACCCAAAGAAATGTTTGGAGCAAGTACAAAAAAGAAGTCAAATACCAATGGTTCTGTTCAACAGT GACAGGGGATGGCTCTTTTGAACTCTTGCCTGCGCAGCACTCCTGTTCTTACAAGTTGCAGTTAGAAGATATCGGTAGACGCTTCAGATGTGAATGTATT GTGACTGATGTCTTTGGAAGGTTGAGTGAACTAGCATATGCTGAGACTGCTGCTGTGTTGCCAGGGATTCCTAGAATAAATAAGTTGGAGATTGAGGGTA GGGGTTTTCACACCAACTTATATGCTGTTAGAGGCATTTACAGTGGAGGAAAAGAAGGCAAAAGTAGAATTCAATGGCTTAGATCAATGATTGGTAGTCC CGATCTAATCTCCATTCCAGGGGAGGTGGGAAGGATGTATGAAGCTAATGTTGATGATGTGGGGTACAGGCTGGTGGCAATTTATACTCCTGTGAGAGAC GATGGTGTTGAGGGGCAACCGGTGTCTGCATCAACAGAGTCAATTGCAGTTGAGCCTGATGTTTTTAAAGAAGTTAAGCAGAAGATTGAACTTGGATCTG TGAAGTTTGAGGCATTATGTGACAAAGACCGTTCTCCAAAAAAGGTTCTTGGAGAGGGTAGTCTTAGTCTTGAGAGAAGAATACTAGAAGTTAATAGGAA ACGAGTGAAAGTTGTGAAGCCTGGTTCTAAGACTTCTTTTCCAACTACTGAAATTCGTGGAAGTTATGCTCCTCCCTTTCATGTGGAGCTTTTCCGAAAT GACCAGCATCGGCTTAGGATTGTTGTGGATAGTGAGAATGAAGTAGACCTGATGGTCCACTCGAGACATTTGCGGGATGTCATCGCTCTTGTGATTCGAG GCTTTGCTCAGCGATTCAATAGCACATCCCTCAATTCTTTGCTCAAAATAGACAATAACTATGGTGTAAAATGA
AA sequence Show only first row Show all	>Potri.011G090150.1 pacid=42782340 polypeptide=Potri.011G090150.1.p locus=Potri.011G090150 ID=Potri.011G090150.1.v4.1 annot-version=v4.1 MKGSPRTILSDVIVPADPVGLELVIPNCYEDKEAIPQKTYFGGQEGAGEYIWFRTRDKLNKSELLDISNAGDDDLICGKTLAYTPSIEDVGAYLALYWLP TRADGKCGKPLVTISNSPVNPALPVVSNVHVKELSLGVYAGEGKYFGGHEGLSLFSWYRETNEGTIILINGANSRTYEVTDLDYNCCLLFGYTPVRSDSV VGELKLSEPTNIILPELPQVEMVALTGKAIEGDVLTAVEVIPKSETQRNVWSKYKKEVKYQWFCSTVTGDGSFELLPAQHSCSYKLQLEDIGRRFRCECI VTDVFGRLSELAYAETAAVLPGIPRINKLEIEGRGFHTNLYAVRGIYSGGKEGKSRIQWLRSMIGSPDLISIPGEVGRMYEANVDDVGYRLVAIYTPVRD DGVEGQPVSASTESIAVEPDVFKEVKQKIELGSVKFEALCDKDRSPKKVLGEGSLSLERRILEVNRKRVKVVKPGSKTSFPTTEIRGSYAPPFHVELFRN DQHRLRIVVDSENEVDLMVHSRHLRDVIALVIRGFAQRFNSTSLNSLLKIDNNYGVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34680		AIR9	AUXIN-INDUCED IN ROOT CULTURES...		Potri.011G090150 [exp]	0	1
AT3G03210			unknown protein		Potri.004G080600 [exp]	8.24	0.7959
					Potri.013G099450 [exp]	11.61	0.7623
AT3G19620			Glycosyl hydrolase family prot...		Potri.001G294700 [exp]	14.07	0.7622
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.009G036450 [exp]	21.33	0.7498
					Potri.010G183951 [exp]	21.49	0.7252
AT3G26020			Protein phosphatase 2A regulat...		Potri.004G177900 [exp]	24.97	0.7175
AT3G53270			Small nuclear RNA activating c...		Potri.004G126720 [exp]	30.29	0.7358
					Potri.002G022002 [exp]	38.41	0.6823
AT1G20270			2-oxoglutarate (2OG) and Fe(II...		Potri.002G016700 [exp]	44.54	0.7019
AT1G26660			Prefoldin chaperone subunit fa...		Potri.010G163600 [exp]	44.74	0.6959

Compare expression of checked genes

Potri.011G090150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.