Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34680 1306 / 0 AIR9 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) AT5G19680 64 / 3e-10 Leucine-rich repeat (LRR) family protein (.1) AT1G78230 62 / 2e-09 Outer arm dynein light chain 1 protein (.1) AT4G03260 60 / 9e-09 Outer arm dynein light chain 1 protein (.1.2) AT5G22320 47 / 6e-05 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT1G64210 44 / 0.0006 Leucine-rich repeat protein kinase family protein (.1) AT5G61240 44 / 0.0007 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT1G62440 44 / 0.001 LRX2 leucine-rich repeat/extensin 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G357700 [exp] 1826 / 0 AT2G34680 2236 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.011G090150 [exp] 94 / 2e-19 AT2G34680 840 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.019G119300 [exp] 64 / 7e-10 AT4G03260 549 / 0.0 Outer arm dynein light chain 1 protein (.1.2) Potri.005G164000 [exp] 61 / 5e-09 AT1G78230 464 / 2e-155 Outer arm dynein light chain 1 protein (.1) Potri.002G097800 [exp] 60 / 8e-09 AT1G78230 523 / 3e-178 Outer arm dynein light chain 1 protein (.1) Potri.019G119500 [exp] 60 / 1e-08 AT4G03260 521 / 3e-177 Outer arm dynein light chain 1 protein (.1.2) Potri.018G086200 [exp] 57 / 4e-08 AT5G19680 486 / 5e-174 Leucine-rich repeat (LRR) family protein (.1) Potri.006G163900 [exp] 56 / 8e-08 AT5G19680 513 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.004G199200 [exp] 52 / 2e-06 AT5G22320 354 / 2e-118 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023270 [exp] 1410 / 0 AT2G34680 1368 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Lus10038534 [exp] 600 / 0 AT2G34680 1378 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Lus10012715 [exp] 69 / 4e-12 AT5G19680 458 / 2e-163 Leucine-rich repeat (LRR) family protein (.1) Lus10010891 [exp] 65 / 6e-11 AT5G19680 384 / 3e-135 Leucine-rich repeat (LRR) family protein (.1) Lus10039729 [exp] 64 / 5e-10 AT4G03260 429 / 2e-142 Outer arm dynein light chain 1 protein (.1.2) Lus10018514 [exp] 64 / 7e-10 AT4G03260 509 / 1e-172 Outer arm dynein light chain 1 protein (.1.2) Lus10033444 [exp] 59 / 2e-08 AT1G78230 450 / 8e-151 Outer arm dynein light chain 1 protein (.1) Lus10020932 [exp] 59 / 3e-08 AT1G78230 448 / 1e-149 Outer arm dynein light chain 1 protein (.1) Lus10005198 [exp] 54 / 7e-07 AT5G22320 318 / 9e-105 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10013308 [exp] 52 / 2e-06 AT5G22320 362 / 9e-122 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G090200.3 pacid=42782104 polypeptide=Potri.011G090200.3.p locus=Potri.011G090200 ID=Potri.011G090200.3.v4.1 annot-version=v4.1 ATGGTATGCTGTCTTGCTGTTGTGGTGGTTGAATCAGGCTACCTTAGCTTAAAAATGGAGGAACCTTTAAGTGACGAGGCGGCTAAAAAGTCTCCGACTT CAGACAAACAGAGGCAGCAGTCGTCTGTTAGCTCAATGCAAATCCCTATGAAGGTTTCGAAAACCACAAAACCTACTATTTCAGCCAATTCCCACCTCTT AACACCAATTGGTTCTATTCGAAAGAGGACTGAACCAAAAAACAGTTCAGATTCAAGTTCAAATGTGACCGCCAAAAACGCATCCTCCTGCAATACCAAG TCAGTTCCAATCGCCAGAAGAAACAGCACTGGAGGGGTTCCTGAGAAGCAACCTGTCTCTTCAACAAAACGGCAGAATACCAGCGGAAAGACTAATGCTG TTTCGGACCCAGTGAGGAGGTCCCTTCCAGAGCTTAGAAGGAGTTCCTTGCCTCCTACAAAACCCATGGTTAGAACTGGTAGTGTTTCCGAGACTAGGAA CTCAGTTCCCATGGACAAGTGTTTGAGAGCATCAACTGGGTCAGGTGTAAGTAGGCTGGAGAAGCCTTCAGTTAAGCCAGCATTGCCAGCCTCTTCTTCT TCTTCTTCTTCCAGAAGGGTTATTTCCACATCAGTGGACAGTACTGCCAGTAGCATGAGCAGGAAGAAGCTTTCTTCTCCATCTGCTACGTCCCCTTCTA TTTCTAGTGGTTTGAGAGCCGGGTCCCTATCAACTTCTCGGGATAGGAGTTTCAATTTGACTGGACGGAGAAGAGCAGGTGCTCCTGAAAGCCACGATTC TCACTTCATTGCTCTTCCACTGGTGGAAACTAAAGCTGGCGATGATGTGAGATTGGATCTTAGAGGACACAAAGTACGTAGTCTCAATGCTAGTGGGTTG AACTTAGCCCAAAATTTAGAGTTTGTTTATCTTCGAGACAATCTCCTTTCTACATTGGAAGGAATTGAGATACTGAAGCGTGTGAAGGTCCTTGATTTGA GTTTCAATGAGTTCAAGGGGCCTGGGTTTGAACCTCTTGAGAATTGCCAGGCCCTTCAGCAACTCTATCTTGCTGGGAATCAAATCACATCACTTGTAAA CCTTCCTCAGCTTCCTAACCTGGAGTTTCTTTCGGTCGCTCAAAACAAGTTAAAGTCTCTGTCAATGGCAGGCCAACCTCGACTACAGGTGTTAGCTGCC AGCAAAAACAAAATAACAACTCTGAAGGGTTTCCCGCACCTACCATCCCTCGAGCATTTGCGAGTGGAGGAGAATCCTATACTTAAGATGCCTCATTTAG AAGCCGCCTCGATTTTGCTTGTTGGTCTTACCTTGAAAAAGTTTAATGATAGAGATCTTTCCCGGGAAGAGGTTGCAATTGCAAAGCGTTATCCAGCATG CACGGCATTGTGTATTAGAGATGGTTGGGAGCTTTGTCGCCCTGAGAATGCAGCAGACTCCACTTTTCACTTTCTGTATGAGCAATGGAAAGAGCATTTC CCTCCTGGTTATCTGCTCAAAGATGCGTTGGTAGATCAACCTTTCGAAGGAGATGCTTGCCACTGCCACTTTGTTTTTGTTCAAGACAACAATCTAAGTG CCGCTCCACAGTTAGTCTTAAAGTATCAATGGTTTGTGGGAGAAAGAGCACTTTCAAGCTTTGCTGCCATTCCTGATGCCACTGGAGAGGTATACTGGCC AAAGCATGAAGACATCGGTAAATTTCTGAAAGTGGAATGTACTTCCGTAATGGGAGAAATAGAGTATCCTCCTATTTTTGCCCTATCATCATGTGTTTCA CCCGGAAATGGAATTCCAAAGGTTGTGAACCTTGAAGTGCAAGGAGAGTTGGTGGAAGGAAATGTTATCAAAGGCTATGCTGGGATTGCATGGTGTGGTG GAACTCCAGGGAAAGGTGTTGCTAGTTGGCTGAGGAGAAGATGGAATAGTAGCCCAGTGGTTATTGCAGGGGCAGAAGATGAGGAGTATTGTTTAACTTT AGATGACATTGATTCCAGTTTGGTTTTTATGTACACACCAGTCACAGAAGAAGGCGCCAAAGGGGAACCTCAATATAAATATACTGATTTTGTTAAAGCA GCACCTCCATCGGTCAGCAATGTTCGAATTATTGGAGATATTGTAGAAGGAAATATCATTAAAGGAGTTGGGGATTACTTTGGGGGGAAAGAGGGCCCCA GCAAGTTTGAATGGTTACGGGAGAATAAGAATACTGGAGATTTTGTATCCATATCAACTGGTACATCTGAGTATGCCTTGACCAATGAAGATGTTGGACG ATGCTTAGCTTTTGTATATTCACCCATTAATTTTGAAGGACAGGAAGGGAAATCTGTTTCAATATTTTCTCACCCAGTGAAGCAAGCACCTCCTAAAGTA AAGAATATAAAGATAATTGGTCATTTACGGGAAAACAGTAAGGTCACTGTAACTGCTACCGTTACTGGAGGAACTGGAGGAACTGAAGGTTCTAGCAGAG TTCAGTGGTTTAAAACAAGTTCTTCAACATTGGATGGTGAGAATAGTCTTGATGCATTGATCACAGCAAAGATTGCAAAGGCATTACGAATACCTTTAGG AGCAGTTGGTTATTACATTGTTGCGAAATATACTCCTATGACTCCAGATGGTGAATCTGGTGAACCAGCATATGCTATATCTGAAAAAGCAGTTGAGACT CTTCCCCCAAGCCTAAATTTCTTATCAATTTCGGGCGACTACACTGAAGGTGGAATATTGACAGCATCATACGGTTATGTAGGTGGTCATGAAGGGAAAA GTGAATATAATTGGTTTCTTCATGAGTTTGAAAGAGACAATGGAACCTTGATACTTGAGGGTTCTGGAGTTCTTCGGTATTGTGTTACTAGAGATGCAAT TGGTAAATTCATATCTTTTCAGTGCATCCCAGTCCGTGATGATGGAATAGCAGGTGAGCCAAGAACTTGCATGGGGGTGGAACGCATTCGACCAGGAAGT CCAAGATTGCTTTCTCTGCAAATAGTTGGAAATGCTATTGAAGGAACTTCACTAAGCGTTGACAAAAAATACTGGGGAGGTGAAGAGGGGAATTCAGTTT TCTGCTGGTTTCGGAGTAGTTCAGATGGTGCTCAAATTGAAATTCAAGGAGCCAATACTTCGTCATACATGCTTTCAGTTGATGACATTGGCTCCTTTGT CTCGGTTTCATGTGAGCCTGTGAGAAGTGATTGGGCTTGTGGTCCTACCATTTTTTCTGAACAGATTGGACCTATTATACCAGGTCCTCCAACTTGTCAG TCATTGGAGTTTCTGGGATCGATGATGGAAGGACAACGTTTGAGCTTTGTTGCATCATATAGTGGAGGAGAGAGAGGGAATTGCTTCCATGAATGGTTTA GAGTGAAAAGTGGTGGTATCAGGTAG
AA sequence Show only first row Show all	>Potri.011G090200.3 pacid=42782104 polypeptide=Potri.011G090200.3.p locus=Potri.011G090200 ID=Potri.011G090200.3.v4.1 annot-version=v4.1 MVCCLAVVVVESGYLSLKMEEPLSDEAAKKSPTSDKQRQQSSVSSMQIPMKVSKTTKPTISANSHLLTPIGSIRKRTEPKNSSDSSSNVTAKNASSCNTK SVPIARRNSTGGVPEKQPVSSTKRQNTSGKTNAVSDPVRRSLPELRRSSLPPTKPMVRTGSVSETRNSVPMDKCLRASTGSGVSRLEKPSVKPALPASSS SSSSRRVISTSVDSTASSMSRKKLSSPSATSPSISSGLRAGSLSTSRDRSFNLTGRRRAGAPESHDSHFIALPLVETKAGDDVRLDLRGHKVRSLNASGL NLAQNLEFVYLRDNLLSTLEGIEILKRVKVLDLSFNEFKGPGFEPLENCQALQQLYLAGNQITSLVNLPQLPNLEFLSVAQNKLKSLSMAGQPRLQVLAA SKNKITTLKGFPHLPSLEHLRVEENPILKMPHLEAASILLVGLTLKKFNDRDLSREEVAIAKRYPACTALCIRDGWELCRPENAADSTFHFLYEQWKEHF PPGYLLKDALVDQPFEGDACHCHFVFVQDNNLSAAPQLVLKYQWFVGERALSSFAAIPDATGEVYWPKHEDIGKFLKVECTSVMGEIEYPPIFALSSCVS PGNGIPKVVNLEVQGELVEGNVIKGYAGIAWCGGTPGKGVASWLRRRWNSSPVVIAGAEDEEYCLTLDDIDSSLVFMYTPVTEEGAKGEPQYKYTDFVKA APPSVSNVRIIGDIVEGNIIKGVGDYFGGKEGPSKFEWLRENKNTGDFVSISTGTSEYALTNEDVGRCLAFVYSPINFEGQEGKSVSIFSHPVKQAPPKV KNIKIIGHLRENSKVTVTATVTGGTGGTEGSSRVQWFKTSSSTLDGENSLDALITAKIAKALRIPLGAVGYYIVAKYTPMTPDGESGEPAYAISEKAVET LPPSLNFLSISGDYTEGGILTASYGYVGGHEGKSEYNWFLHEFERDNGTLILEGSGVLRYCVTRDAIGKFISFQCIPVRDDGIAGEPRTCMGVERIRPGS PRLLSLQIVGNAIEGTSLSVDKKYWGGEEGNSVFCWFRSSSDGAQIEIQGANTSSYMLSVDDIGSFVSVSCEPVRSDWACGPTIFSEQIGPIIPGPPTCQ SLEFLGSMMEGQRLSFVASYSGGERGNCFHEWFRVKSGGIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34680		AIR9	AUXIN-INDUCED IN ROOT CULTURES...		Potri.011G090200 [exp]	0	1
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Potri.001G443200 [exp]	4.47	0.7983	MOR2,Pt-MOR1.2
AT1G53050			Protein kinase superfamily pro...		Potri.001G399700 [exp]	6.32	0.6528
AT1G06590			unknown protein		Potri.004G081200 [exp]	15.71	0.6424
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Potri.001G343500 [exp]	18.33	0.6404
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.015G124500 [exp]	23.43	0.7185
AT5G05010			clathrin adaptor complexes med...		Potri.001G293150 [exp]	28.14	0.5599
AT5G47490			RGPR-related (.1)		Potri.003G077100 [exp]	41.35	0.6479
AT1G17500			ATPase E1-E2 type family prote...		Potri.001G197500 [exp]	41.56	0.6147
AT2G32250	FAR1_related	FRS2	FAR1-related sequence 2 (.1.2....		Potri.016G018100 [exp]	45.55	0.5697
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.010G245100 [exp]	46.74	0.6232	NTN2.2

Compare expression of checked genes

Potri.011G090200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.