Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26980 370 / 9e-128 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032638 [exp] 371 / 6e-127 AT4G26980 380 / 9e-131 RNI-like superfamily protein (.1) Lus10043110 [exp] 353 / 3e-121 AT4G26980 327 / 1e-111 RNI-like superfamily protein (.1) Lus10040998 [exp] 42 / 0.0004 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 42 / 0.0005 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G090700.1 pacid=42780810 polypeptide=Potri.011G090700.1.p locus=Potri.011G090700 ID=Potri.011G090700.1.v4.1 annot-version=v4.1 ATGGAAGAGGGGAAAGAAATTACAACCTCTTTGAAGAAACTCGATTTGAATTCCAATATTATGACATCTACTCCTTCCAAGTCTTCCCTCTTTTCCCCAG CCCTTCAATCCCCTGGATTGTTAAGCTGTCGTCGCCGTCGTCCTGGCAAGTCGAAACCTCCAAGTTTATTGAGCTTGTGCCTCGGAGTTGTTGGCAAGAA TTTACAAGATATTATTGCCCACTTGAGTGACATTTCTATCGCCTTTCCTCCGCATATTAAGATGACAATTGCAGCAATTGCCAGGAGAAGGAAAATGCTA TGTGATGAGGTTATCATTCCTTTAGCTGATACTTCCTGGGAGATACTTGACATTTCTGGCTCAGAAGTTACTGATTCTGGTTTAATAGAAGTGACCAAAA CTTGTAAATTTCTTCGAGCTGTGGATATAAGTCGATGCAACAAAATTACTGCTTCTAGTGTTTCTGTACTTGTGGAGCACTGCAAGTCCCTGCAAACATT GAGATGCGGAGGATGCCCAAGGAGTGACTACACAGCACGCTGCTGCTTGACTCTGTTGAAACCAAAGCTGGATGATATGGTAGGAGATTCATGGGAGGAA CTTGACACTGCTGAAATCAGTCATAATGCTGAATCCTTGCATTGGCTTGTGTGGCCAAAGATTGATAAAGATTCACTGGAGATCTTGGCAACTGAGTGCC CACGTATTTCAGTAAATCCGAAGCGGTCACCCTTTGGCTTTAGAGGAAAGGATATTCCCGTAGAAGCTTTTCCAGATACTGCTCTGGATGATCTGTTTGT TCAGGAGATTAATCCCAGCACGTGGGCAGCAAACGGGATTACATTAAAACCTGTTTCTCCAATTCTTTCGAACTCCAAGGAGTTGTCCTTGGCTGAAAAA TTTAGACTTGCCTTTGTGGAAAGAGATACACGATTAGCACCAAAGCGAGCTAAGAATGCAAGACAGCATCAGCGTCGCTCAGACAGGGAGTGGATGACGA TGAGTGCTGAATCAAAGGCCATAGTCCTGGCCTCTCAAGTGAGCAAATCCCTGCATGGTAGGAACTAA
AA sequence Show only first row Show all	>Potri.011G090700.1 pacid=42780810 polypeptide=Potri.011G090700.1.p locus=Potri.011G090700 ID=Potri.011G090700.1.v4.1 annot-version=v4.1 MEEGKEITTSLKKLDLNSNIMTSTPSKSSLFSPALQSPGLLSCRRRRPGKSKPPSLLSLCLGVVGKNLQDIIAHLSDISIAFPPHIKMTIAAIARRRKML CDEVIIPLADTSWEILDISGSEVTDSGLIEVTKTCKFLRAVDISRCNKITASSVSVLVEHCKSLQTLRCGGCPRSDYTARCCLTLLKPKLDDMVGDSWEE LDTAEISHNAESLHWLVWPKIDKDSLEILATECPRISVNPKRSPFGFRGKDIPVEAFPDTALDDLFVQEINPSTWAANGITLKPVSPILSNSKELSLAEK FRLAFVERDTRLAPKRAKNARQHQRRSDREWMTMSAESKAIVLASQVSKSLHGRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26980			RNI-like superfamily protein (...		Potri.011G090700 [exp]	0	1
AT1G79220			Mitochondrial transcription te...		Potri.007G069100 [exp]	1.00	0.9155
					Potri.010G102250 [exp]	1.41	0.9010
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Potri.007G052800 [exp]	2.00	0.8929
AT1G54150			E3 Ubiquitin ligase family pro...		Potri.003G065500 [exp]	2.23	0.8876
AT2G39805			Integral membrane Yip1 family ...		Potri.008G060300 [exp]	3.00	0.9003
AT3G58030			RING/U-box superfamily protein...		Potri.016G058300 [exp]	3.87	0.8502
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.016G066400 [exp]	4.89	0.8854
AT4G25180			RNA polymerase III RPC4 (.1)		Potri.003G107300 [exp]	6.00	0.8453
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Potri.001G132500 [exp]	7.48	0.8694
AT1G13360			unknown protein		Potri.015G054300 [exp]	8.24	0.8459

Compare expression of checked genes

Potri.011G090700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.