Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50710 529 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043109 [exp] 509 / 1e-180 AT1G50710 494 / 6e-175 unknown protein Lus10032639 [exp] 503 / 6e-178 AT1G50710 522 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14735 [poplar] [flax] HAUS4 HAUS augmin-like complex subunit 4
Representative CDS sequence Show only first row Show all	>Potri.011G090800.5 pacid=42780518 polypeptide=Potri.011G090800.5.p locus=Potri.011G090800 ID=Potri.011G090800.5.v4.1 annot-version=v4.1 ATGGTGAAGGGAGGAGTGCAAAACCCAGGATTAGCAGCGGATGTGAGTCAGGTGATTGATCAGTTGGAACGGCACTGTTTGGCACCCGACGGATCTCTTG TCTCCAAATCCGCCTTCTCCGACCTCCAACTCGCCAGAGAGGATATGTCCAGGGAGAGATTGCGCTACTTAGAAGCTTTGGCAATTTATTGTGAAGCAAT TGCCATGGTGGAAGAGTATCAACAGCAGGGTGTTTCCATGGCTAATCTTGGAGGAATTCGAGATGTCCAAGGCTCGAACAGCTCTCCTCAGGTTTATGAG ACTCTAGAGCACCGCTTAGTCGTTGCAGAAGCAGCTCAGAAATTGAGGCTTCCTCTTATATCGAAGGATGGTGAGATCCATGAGGAGGAAATTGAAAAAT GGACTGTAATGTCTCGAAGTTCCCTTGATAGTACAAGTACCAGTGTTACCATCAGCTCAACCTCTAACTCCATCAATTATACGAACAGTTCTGCAAACAG CACTGCAAGTGCAGCAAACAATGCCGCTTTTCTTACTAATAATGACTCAACAGAACCTGGAGTTGGTGGCGTTCCTAATCGCTTTCTTGGCATAACACCT GCCTATTTGTGGCAAACTCATCTTCAACAAATGCCATTCATGATGGACATTGCTGAATATCAGATGTCTCTTTCATGTGAGGTTGAGGCTCGCTTGAAAG CTAAATGCATTAAGTTAGCTGATGCTTTTGTTGATGATATCGATTCAATGCCTGTTAATCAAAATTCAACTGCTCGCCTTCCAGAGAGGGTCAAGTTGAT AATTGAGGAAATTGAAAAGGAAGAAGCAGCCCTGCGAGAGGATCTTTATTCTGCAGATAGAAAATTTGCTGAATATTACAATGTTTTAGAGCAGATACTT GGCGTGCTTATTAAGCTTGTCAAAGATTTGAAGCTGCAACATCAACATAAATATGATGAACTACAGAAGACTTGGTTGTGTAAAAGGTGTGAGACCATGA GTGCAAAACTAAGGGTTCTGGAGCATGTTCTCCTTCTTGAAACTTATACTCAGGAATCAATACCAGCTCTTCATAAAATAAGGAAATATCTTGTCGAGGC CACAGAAGAAGCTTCTATTGCATACAATAAAGCGGTTACACGCCTGCGTGAATATCAAGGTGTTGATCCTCACTTTGACACAATCGCAAGACAGTACCAT GATATTGTAAAGAAATTGGAAAACATGCAATGGACAATCCATCAAGTTGAAATGGACCTGAAACGGTTACCAGATCATCCAAGAGCTTAA
AA sequence Show only first row Show all	>Potri.011G090800.5 pacid=42780518 polypeptide=Potri.011G090800.5.p locus=Potri.011G090800 ID=Potri.011G090800.5.v4.1 annot-version=v4.1 MVKGGVQNPGLAADVSQVIDQLERHCLAPDGSLVSKSAFSDLQLAREDMSRERLRYLEALAIYCEAIAMVEEYQQQGVSMANLGGIRDVQGSNSSPQVYE TLEHRLVVAEAAQKLRLPLISKDGEIHEEEIEKWTVMSRSSLDSTSTSVTISSTSNSINYTNSSANSTASAANNAAFLTNNDSTEPGVGGVPNRFLGITP AYLWQTHLQQMPFMMDIAEYQMSLSCEVEARLKAKCIKLADAFVDDIDSMPVNQNSTARLPERVKLIIEEIEKEEAALREDLYSADRKFAEYYNVLEQIL GVLIKLVKDLKLQHQHKYDELQKTWLCKRCETMSAKLRVLEHVLLLETYTQESIPALHKIRKYLVEATEEASIAYNKAVTRLREYQGVDPHFDTIARQYH DIVKKLENMQWTIHQVEMDLKRLPDHPRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50710			unknown protein		Potri.011G090800 [exp]	0	1
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Potri.005G100500 [exp]	3.87	0.7975
AT3G59500			Integral membrane HRF1 family ...		Potri.014G175900 [exp]	7.34	0.8098
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.012G118100 [exp]	8.30	0.8024
AT3G61610			Galactose mutarotase-like supe...		Potri.002G167200 [exp]	10.19	0.7236
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Potri.010G127500 [exp]	14.14	0.7881	PDF1.3
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.011G061300 [exp]	17.08	0.8011	Pt-RAB11.12
AT4G10390			Protein kinase superfamily pro...		Potri.011G147100 [exp]	21.11	0.8043
AT2G38680			5'-nucleotidases;magnesium ion...		Potri.010G243900 [exp]	31.43	0.7579
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.001G152800 [exp]	32.66	0.7254	Pt-RAB1.5
AT1G76070			unknown protein		Potri.005G245600 [exp]	38.06	0.7653

Compare expression of checked genes

Potri.011G090800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.