Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PPX1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55260 614 / 0 EP128, PPX-2, PPX2 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) AT4G26720 598 / 0 PPX-1, EP129, EP124, PPX1 PROTEIN PHOSPHATASE X-1, protein phosphatase X 1 (.1) AT1G59830 432 / 7e-154 PP2A-1 protein phosphatase 2A-2 (.1.2) AT1G10430 431 / 2e-153 PP2A-2 protein phosphatase 2A-2 (.1) AT1G69960 431 / 2e-153 PP2A serine/threonine protein phosphatase 2A (.1) AT2G42500 429 / 1e-152 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3) AT3G58500 428 / 5e-152 PP2A-4, EP7, PP2A-3 protein phosphatase 2A-4 (.1) AT1G50370 395 / 3e-139 AtFYPP1 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT3G19980 394 / 1e-138 STPP, ATFYPP3, EMB2736 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) AT2G39840 288 / 1e-96 TOPP4 type one serine/threonine protein phosphatase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G358700 [exp] 625 / 0 AT5G55260 609 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.010G039700 [exp] 432 / 7e-154 AT1G10430 609 / 0.0 protein phosphatase 2A-2 (.1) Potri.008G191600 [exp] 432 / 8e-154 AT1G10430 610 / 0.0 protein phosphatase 2A-2 (.1) Potri.015G068300 [exp] 432 / 1e-153 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Potri.012G073300 [exp] 430 / 7e-153 AT1G10430 605 / 0.0 protein phosphatase 2A-2 (.1) Potri.003G217900 [exp] 429 / 2e-152 AT2G42500 627 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.001G007800 [exp] 428 / 6e-152 AT2G42500 628 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.016G062000 [exp] 427 / 1e-151 AT3G58500 622 / 0.0 protein phosphatase 2A-4 (.1) Potri.006G196100 [exp] 425 / 1e-150 AT3G58500 620 / 0.0 protein phosphatase 2A-4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016576 [exp] 628 / 0 AT5G55260 615 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Lus10033122 [exp] 431 / 2e-153 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Lus10042160 [exp] 433 / 4e-153 AT1G10430 611 / 0.0 protein phosphatase 2A-2 (.1) Lus10013287 [exp] 430 / 6e-153 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10030810 [exp] 430 / 6e-153 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10039185 [exp] 424 / 2e-150 AT2G42500 624 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10025174 [exp] 423 / 5e-150 AT2G42500 619 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10036657 [exp] 422 / 8e-150 AT1G10430 598 / 0.0 protein phosphatase 2A-2 (.1) Lus10016053 [exp] 416 / 8e-147 AT2G42500 610 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10013754 [exp] 412 / 7e-146 AT2G42500 601 / 0.0 protein phosphatase 2A-3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Potri.011G092200.1 pacid=42781279 polypeptide=Potri.011G092200.1.p locus=Potri.011G092200 ID=Potri.011G092200.1.v4.1 annot-version=v4.1 ATGTCAGACCTCGACAGGCAAATTGAGCAACTGAAGAAGTGCGAGCCATTGAAGGAATCGGAAGTGAAAGCACTTTGCCTCAAAGCTATGGAAATCCTCG TCGAAGAGAGCAACGTTCAACGCGTCGATGCTCCCGTCACTATATGTGGTGATATTCATGGACAGTTTTATGACATGAAAGAGCTTTTCAAAGTAGGAGG GGATTGCCCAAAGACTAACTACTTGTTTCTTGGAGATTTTGTTGACAGAGGATTTTACTCCGTTGAGACATTTCTGCTTCTACTAGCCCTTAAGGTGAGA TATCCAGATAGGATAACACTCATTAGAGGGAATCATGAGAGCCGTCAGATAACTCAGGTATATGGATTTTATGATGAGTGTCTGCGTAAATATGGCTCAG TGAATGTTTGGAGATATTGCACCGATATATTTGATTATCTAAGTCTGTCAGCACTGATTGAGAATAAGGTTTTTAGTGTCCATGGTGGTCTCTCTCCTGC CATATCAACATTGGATCAGATCCGAACAATTGATAGGAAGCAAGAAGTACCTCACGATGGTGCCATGTGTGATCTTCTTTGGTCAGACCCTGAAGATATT GTCGATGGTTGGGGGTTGAGTCCACGTGGTGCCGGTTTTCTATTTGGTGGCAGTGTGGTCACTTCTTTCACCCACTCAAACAATATTGATTACATATGCC GTGCTCATCAGCTGGTGATGGAGGGGTATAAGTGGATGTTCAGGAACCAAATAGTCACTGTCTGGTCGGCTCCAAACTACTGTTACAGATGTGGTAATGT TGCTGCAATCCTTGAGCTGGATGAGAATCTTAACAAGCAGTTTCGCGTGTTTGATGCTGCTCCACAGGAATCAAGAGGCGCACCTTCCAAAAAACCAGCA CCCGATTACTTCTTATGA
AA sequence Show only first row Show all	>Potri.011G092200.1 pacid=42781279 polypeptide=Potri.011G092200.1.p locus=Potri.011G092200 ID=Potri.011G092200.1.v4.1 annot-version=v4.1 MSDLDRQIEQLKKCEPLKESEVKALCLKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVR YPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLSLSALIENKVFSVHGGLSPAISTLDQIRTIDRKQEVPHDGAMCDLLWSDPEDI VDGWGLSPRGAGFLFGGSVVTSFTHSNNIDYICRAHQLVMEGYKWMFRNQIVTVWSAPNYCYRCGNVAAILELDENLNKQFRVFDAAPQESRGAPSKKPA PDYFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55260		EP128, PPX-2, P...	PROTEIN PHOSPHATASE X -2, prot...		Potri.011G092200 [exp]	0	1	Pt-PPX1.2
AT2G26920			Ubiquitin-associated/translati...		Potri.001G033600 [exp]	6.63	0.7202
					Potri.005G149601 [exp]	6.92	0.6996
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Potri.016G139100 [exp]	9.84	0.7426
AT5G56000		Hsp81.4, AtHsp9...	HEAT SHOCK PROTEIN 90.4, HEAT ...		Potri.016G003400 [exp]	17.23	0.7320
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Potri.001G373300 [exp]	29.49	0.7195
AT5G56000		Hsp81.4, AtHsp9...	HEAT SHOCK PROTEIN 90.4, HEAT ...		Potri.001G466000 [exp]	31.74	0.6757
AT4G12400		Hop3	Hop3, stress-inducible protein...		Potri.001G119500 [exp]	34.40	0.7159	STI.2
AT5G15740		RRT1	O-fucosyltransferase family pr...		Potri.004G113500 [exp]	40.73	0.7183
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.006G132800 [exp]	44.21	0.6318
AT2G45670			calcineurin B subunit-related ...		Potri.002G151800 [exp]	50.79	0.5797

Compare expression of checked genes

Potri.011G092200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.