Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	TIM50.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55900 416 / 4e-145 TIM50, EMB1860 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT1G29780 82 / 8e-18 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G45700 81 / 3e-17 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29770 77 / 1e-15 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G11860 74 / 2e-14 SSP5 SCP1-like small phosphatase 5 (.1.2.3.4) AT5G46410 71 / 2e-13 SSP4 SCP1-like small phosphatase 4 (.1.2) AT3G55960 69 / 6e-13 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G18140 69 / 1e-12 SSP4b SCP1-like small phosphatase 4b (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G364500 [exp] 613 / 0 AT1G55900 405 / 3e-141 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.004G062900 [exp] 96 / 3e-22 AT5G45700 194 / 1e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.011G072000 [exp] 89 / 8e-20 AT5G45700 230 / 5e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G353700 [exp] 83 / 4e-17 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2) Potri.010G188500 [exp] 78 / 4e-16 AT3G55960 406 / 8e-144 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.008G068800 [exp] 78 / 5e-16 AT3G55960 342 / 3e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.011G078300 [exp] 78 / 1e-15 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2) Potri.003G173700 [exp] 71 / 2e-13 AT5G11860 388 / 2e-133 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.006G100800 [exp] 68 / 1e-12 AT3G55960 304 / 6e-103 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016610 [exp] 514 / 0 AT1G55900 415 / 4e-145 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10004414 [exp] 497 / 1e-177 AT1G55900 411 / 1e-143 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10032582 [exp] 479 / 1e-170 AT1G55900 378 / 2e-130 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10043165 [exp] 478 / 3e-170 AT1G55900 380 / 2e-131 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10028284 [exp] 85 / 2e-18 AT3G55960 383 / 2e-134 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10009890 [exp] 79 / 2e-16 AT3G55960 445 / 9e-159 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10014844 [exp] 79 / 3e-16 AT3G55960 441 / 2e-157 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10007321 [exp] 79 / 4e-16 AT5G45700 206 / 3e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10029273 [exp] 78 / 7e-16 AT5G45700 211 / 4e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10004596 [exp] 76 / 1e-14 AT5G46410 398 / 3e-135 SCP1-like small phosphatase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF03031 [poplar] [flax] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Potri.011G093000.1 pacid=42782147 polypeptide=Potri.011G093000.1.p locus=Potri.011G093000 ID=Potri.011G093000.1.v4.1 annot-version=v4.1 ATGGCTTCCACGGTACTTCGATCTCGCATTTTATCAATCGTATCAAGAAACAATAAACCTAATCGCAGATTCTTTTGTTCAAATAAAGAACCCATCATCT CTTCTCAATCAACTATACCCGATCAATCTGCTGCGGCGGCGGAGGAAGCACCGGCGCAGGCTGCGGGGATTCGGGAGAATAAGGCATGGAACTTTTTCAA GTATGGAATTATTGGCGCTCTCACTGGAGCCACTGCTTTTGCTGGATACGCTTCTTACGCCTACAGTTTGGATGAAGTGGAGGAGAAGACGAAAACTTTG CGAGAATCAGTAAACTATACTGCTAGTAATGACGCTTCCAATGTTGAGAAGTATCAAGGTTTGCTGTACTCCACAGTGATGACAGTTCCTGTTAAAGCGG TGGAACTTTACTTGGATCTGAGGAAGTTACTGGAAGAACATGTCAAAGGTTTTACTGAACCAGCCTCAGATAAACTTCTTCCTGATTTGCATCCTGCTGA GCAACATGTTTTTACTCTTGTTTTAGATCTTAACGAGACAATAATTTATAGTGATTGGAAGCGTGACAGGGGCTGGCGAACATTCAAACGACCGGGAGTA GATGACTTCTTGCAACACCTTGGACGGTTCTATGAAATTGTTGTGTATTCGGATCAGCTAAGTATGTATGTCGATCCTGTTGTTGAAAGGTTGGATCCAA ACCACTTTATCAGGTACAGGCTATCAAGGAGTGCTACCAGGTATCAGGATGGCAAGCATTATAGAGATCTTTCAAAACTTAATAGAGATCCGGGCAAAAT CCTCTATGTGAGTGGTCATGCATTTGAAAATAGCCTTCAGCCAGAAAATTGTGTCCCAATTAAGCCATTCAAGATCGATGAAACGGGTGATGTACCTCTG GATACAGCACTTTTGGATCTTATTCCGTTTCTTGAGTATGTTGCTCGCAACAGTCCATCTGACATCAGAACAGTTTTGGCATCATATGAAAGAAAGGATT TAGGAAAAGAGTTCCTTGAACGTTCTAAAGATTATCAGAGGCGAATGCAAGAACAAAGGCAGCAAGGCCGCCTCTGGCGTCGCTGA
AA sequence Show only first row Show all	>Potri.011G093000.1 pacid=42782147 polypeptide=Potri.011G093000.1.p locus=Potri.011G093000 ID=Potri.011G093000.1.v4.1 annot-version=v4.1 MASTVLRSRILSIVSRNNKPNRRFFCSNKEPIISSQSTIPDQSAAAAEEAPAQAAGIRENKAWNFFKYGIIGALTGATAFAGYASYAYSLDEVEEKTKTL RESVNYTASNDASNVEKYQGLLYSTVMTVPVKAVELYLDLRKLLEEHVKGFTEPASDKLLPDLHPAEQHVFTLVLDLNETIIYSDWKRDRGWRTFKRPGV DDFLQHLGRFYEIVVYSDQLSMYVDPVVERLDPNHFIRYRLSRSATRYQDGKHYRDLSKLNRDPGKILYVSGHAFENSLQPENCVPIKPFKIDETGDVPL DTALLDLIPFLEYVARNSPSDIRTVLASYERKDLGKEFLERSKDYQRRMQEQRQQGRLWRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Potri.011G093000 [exp]	0	1	TIM50.1
AT1G78540		STATLB, ATSHB	STAT-TYPE LINKER-SH2 DOMAIN FA...		Potri.011G102100 [exp]	5.91	0.7880
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Potri.013G008900 [exp]	6.32	0.8024	Pt-LON_ARA_ARA.1
AT2G31740			S-adenosyl-L-methionine-depend...		Potri.001G317700 [exp]	7.00	0.8098
AT2G27460			sec23/sec24 transport family p...		Potri.004G201800 [exp]	8.48	0.7962
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Potri.004G235900 [exp]	9.16	0.7716	Pt-ATRLI1.1
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Potri.017G059200 [exp]	12.00	0.7264
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Potri.003G002950 [exp]	13.63	0.7991
AT5G66960			Prolyl oligopeptidase family p...		Potri.007G035900 [exp]	16.24	0.7787
AT1G68990		MGP3	male gametophyte defective 3 (...		Potri.008G112800 [exp]	16.49	0.7539
AT4G27640			ARM repeat superfamily protein...		Potri.010G169800 [exp]	18.70	0.7314

Compare expression of checked genes

Potri.011G093000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.