Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26630 199 / 1e-54 DEK domain-containing chromatin associated protein (.1.2) AT5G55660 193 / 1e-52 DEK domain-containing chromatin associated protein (.1) AT5G63550 151 / 3e-39 DEK domain-containing chromatin associated protein (.1.2) AT3G48710 149 / 6e-39 DEK domain-containing chromatin associated protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G367400 [exp] 421 / 6e-140 AT5G55660 206 / 3e-57 DEK domain-containing chromatin associated protein (.1) Potri.012G102500 [exp] 180 / 3e-49 AT5G63550 248 / 3e-75 DEK domain-containing chromatin associated protein (.1.2) Potri.015G100700 [exp] 176 / 8e-48 AT5G63550 245 / 6e-74 DEK domain-containing chromatin associated protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035905 [exp] 173 / 3e-46 AT3G48710 322 / 3e-103 DEK domain-containing chromatin associated protein (.1) Lus10025759 [exp] 173 / 1e-45 AT3G48710 328 / 1e-103 DEK domain-containing chromatin associated protein (.1) Lus10022439 [exp] 170 / 7e-45 AT3G48710 335 / 2e-108 DEK domain-containing chromatin associated protein (.1) Lus10016746 [exp] 119 / 3e-28 AT3G48710 263 / 1e-81 DEK domain-containing chromatin associated protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08766 [poplar] [flax] DEK_C DEK C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.011G093200.1 pacid=42782133 polypeptide=Potri.011G093133.1.p locus=Potri.011G093200 ID=Potri.011G093200.1.v4.1 annot-version=v4.1 ATGGGCGAGGAAGAAAATAGGACCGAAGTTCCAGAGGTAACGGCAAATGGGACTAGTGCTCCTGCAAAAGAGAATTCCAATGACGTTATGACTGAAAAAA CAGAGGAAAATAATGGAATAAAAGAAATGGAAGAAGATAAAAATGATAGCGAGAAAGTTGAGATTGCAAGGATGGATGAAGACCCCAAGGTGACTGAAGA AAGGGAAAGCAAAGACAAAGAAGATGGGTTAGAAGAAGGAAGAACTGAAGCAATGGAAGAAGAAATCAAACCCAAAGTAGATGAAGAGATGGAAGGAAAG GAGAAGGAAGCCAAAGAAGAGGTGGAGGAGAAGGTTGATGTGTCCAAGGAGAAAGAGGAGGTGGAGCAGAAGGTTGATGTGTCCAAGGAGAAAGAAGAGG TGGAGGAGAAGGATGGTGGATCCAAGGAGAAACAAGAAAAGTTGGAGGAGGAGGACGGGGAACGATCAAAGCAACGTGGGAAAAGGAAGAGTGATGGGAG GAAAGCTGAAATGAAGAAGGTAATGGAAGAGAAGAAGGAGCCGGAGCCAAGGACTCCTACTTTTGATAGGCCACAGCGTGAAAGAAAATCTGTTGAAAGG CTGGTGGCAACTGTTGACAAAGATGCTGTCAAAGAATTCCAGATTGAAAAGGGCCGAGGTATCCCACTTAAAGATATACCTAATGTGGCATTCAAGTTAT CAAGAAGGAAGGCTGATGATACATTCAAACTGCTTCATACAATTCTCTTTGGAAGGAGAGGAAAGGCATTGCAGATTAAGAGTAATATATCCCGGTTCTC TGGTTTTGTGTGGCATCAAAATGAGGGGAAAGAAAAGAGTAAAGTGAAAGAAAAATTTGACAAGTGCAATAAAGAGAAGCTGTTGGAATTTTGTGATGTG CTTGACATACCAATTACCAAGGTTACTGCAAAGAAGGAAGATGTTGTTACGAAGCTGTTAGATTTTTTGGTGGTCCCCCATGCTACAACCAGTGATTTGC TTGCTGAAAAAGAGAAGGAAAAAGTGAGCAAAAAGCGCAAGAGAGTGGCCAAAAGTTCAACATCTGGGAGCACACCATCGAAACGTTCAGCTAAGAGTCG AAGAAAGGCTGCTGATAATTCAAAGAGGATAGATAAAAAGAGTACATCTGATACAGAAGACGAGTCAGAAGAAGAGAAAGCAGAGGAAGATGAAGAAGAA GAAGAAGAAGAGGAACAAGAAAATGTAGAAGAGCAAAATGAAAATGGTGCTCTAGAAAAATCTGATGCTGAAATCTCTGAACATTCTGAAAGTGAGGAGA AAAATGAATCTGTTGAAGAATCTGAAGAAAACTCCAGAAAACGCAAAAAGAGGTCGGCTACATCATTGAGAAAAAAAGCACCTTGTGGAAAAGCTAAAAC CAGAATCTCCGTCTCCCATAAGTCCAGTCCATCAGTGAAAAGAACGCCTAAAAAATCTTCATCAAAACACATTCTTTCTGATGAGGATAGTGATGCAAGT CCAAAGGTTTCCCCAATGAAGAAGAAAACTGAAAAGGTATCAAAGGAGAAACACTTGCCTTCAAAGAAATCTACCTCCAAGGAAAACACAGGTAAAAAAG TTGGAAAGGGGAAGGAAAAGGCTAAGGTTAAAGAGAACAAATTGATGCCAAGTGATGATGAGCTTAGAGATGCGATATGTGAAATTCTTAAGAAGGTGGA TTTTGACACGGCTACATTCACTGATATTCTAAAGCTACTTGCTCGGCAATTTGACACAGATCTCACTACAAGAAAGTCATCTATTAAGCTTGTGATCCAA GCTGAGCTCACCAAAATAGCAGATGAGGGTGATGATGAAGATGGAGAAGGTGAAGCATAG
AA sequence Show only first row Show all	>Potri.011G093200.1 pacid=42782133 polypeptide=Potri.011G093133.1.p locus=Potri.011G093200 ID=Potri.011G093200.1.v4.1 annot-version=v4.1 MGEEENRTEVPEVTANGTSAPAKENSNDVMTEKTEENNGIKEMEEDKNDSEKVEIARMDEDPKVTEERESKDKEDGLEEGRTEAMEEEIKPKVDEEMEGK EKEAKEEVEEKVDVSKEKEEVEQKVDVSKEKEEVEEKDGGSKEKQEKLEEEDGERSKQRGKRKSDGRKAEMKKVMEEKKEPEPRTPTFDRPQRERKSVER LVATVDKDAVKEFQIEKGRGIPLKDIPNVAFKLSRRKADDTFKLLHTILFGRRGKALQIKSNISRFSGFVWHQNEGKEKSKVKEKFDKCNKEKLLEFCDV LDIPITKVTAKKEDVVTKLLDFLVVPHATTSDLLAEKEKEKVSKKRKRVAKSSTSGSTPSKRSAKSRRKAADNSKRIDKKSTSDTEDESEEEKAEEDEEE EEEEEQENVEEQNENGALEKSDAEISEHSESEEKNESVEESEENSRKRKKRSATSLRKKAPCGKAKTRISVSHKSSPSVKRTPKKSSSKHILSDEDSDAS PKVSPMKKKTEKVSKEKHLPSKKSTSKENTGKKVGKGKEKAKVKENKLMPSDDELRDAICEILKKVDFDTATFTDILKLLARQFDTDLTTRKSSIKLVIQ AELTKIADEGDDEDGEGEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26630			DEK domain-containing chromati...		Potri.011G093200 [exp]	0	1
AT4G36520			Chaperone DnaJ-domain superfam...		Potri.005G229300 [exp]	4.69	0.8978
AT5G36740			Acyl-CoA N-acyltransferase wit...		Potri.002G051400 [exp]	9.00	0.9160
AT5G43490			unknown protein		Potri.001G319500 [exp]	10.00	0.9324
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Potri.010G166100 [exp]	10.95	0.9040
AT5G09880			Splicing factor, CC1-like (.1)		Potri.007G009800 [exp]	11.83	0.8784
AT1G68720		ATTADA, TADA	ARABIDOPSIS THALIANA TRNA ADEN...		Potri.010G132600 [exp]	14.56	0.9119
					Potri.014G015200 [exp]	14.96	0.8915
AT1G20920			P-loop containing nucleoside t...		Potri.005G257400 [exp]	14.96	0.9018
AT5G36740			Acyl-CoA N-acyltransferase wit...		Potri.005G211100 [exp]	16.09	0.9039
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Potri.005G164100 [exp]	17.17	0.9049

Compare expression of checked genes

Potri.011G093200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.