Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63180 509 / 0 Pectin lyase-like superfamily protein (.1) AT5G55720 500 / 1e-177 Pectin lyase-like superfamily protein (.1) AT4G13710 501 / 9e-177 Pectin lyase-like superfamily protein (.1.2) AT1G67750 495 / 2e-175 Pectate lyase family protein (.1) AT3G07010 492 / 4e-174 Pectin lyase-like superfamily protein (.1) AT4G24780 487 / 3e-172 Pectin lyase-like superfamily protein (.1.2) AT3G27400 480 / 2e-169 Pectin lyase-like superfamily protein (.1) AT1G04680 475 / 4e-167 Pectin lyase-like superfamily protein (.1) AT3G24670 472 / 8e-166 Pectin lyase-like superfamily protein (.1) AT5G48900 466 / 8e-164 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G367800 [exp] 572 / 0 AT5G63180 425 / 1e-148 Pectin lyase-like superfamily protein (.1) Potri.015G087800 [exp] 513 / 0 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 504 / 3e-179 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.008G182200 [exp] 496 / 6e-176 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.001G339500 [exp] 495 / 1e-175 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.010G051800 [exp] 492 / 1e-173 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.003G175900 [exp] 487 / 1e-171 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G052300 [exp] 487 / 1e-171 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.002G238800 [exp] 486 / 3e-171 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022817 [exp] 501 / 2e-177 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011885 [exp] 501 / 2e-177 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038157 [exp] 499 / 1e-176 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10014887 [exp] 490 / 2e-173 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023679 [exp] 491 / 4e-173 AT4G13710 729 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10006456 [exp] 489 / 7e-173 AT1G67750 625 / 0.0 Pectate lyase family protein (.1) Lus10011400 [exp] 488 / 2e-172 AT1G67750 623 / 0.0 Pectate lyase family protein (.1) Lus10011758 [exp] 488 / 2e-172 AT4G13710 703 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10022310 [exp] 488 / 2e-172 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10036946 [exp] 478 / 1e-168 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00544 [poplar] [flax] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Potri.011G093400.2 pacid=42780685 polypeptide=Potri.011G093400.2.p locus=Potri.011G093400 ID=Potri.011G093400.2.v4.1 annot-version=v4.1 ATGCCGACATTTTCCCTCTTCTTCCTGGTCCTGATCTCACATGCCACTATAACATTCTCTAGACATCCTCTGCTAAGAATATCAGAAGCAACCAAGTGGA GCTCAACGAGAAGGCAGCTGGGAAACGATGCATGCAGAACCGGTAACCCTATTGATGATTGTTGGAGATGCGACCCAGACTGGGAAACCAACAGGAAGGT GCTAGCTGATTGCGCGATTGGGTTTGGACGCAATGCTGTGGGGGGTCGAGATGGTAACCTCTATGTAGTAACAAATTCTGACAATGATGACCCTGTAAAC CCAATTCCAGGCACACTCCGCTATGGTGTCATCCAAGAAGAGCCTCTGTGGATCATCTTTGATCAGGACATGGTCATCAACTTGAAGGAAGAACTTATTA TGAATTCACACAAAACAATTGATGGCCGGGGGCATAACATCCAGATTGCGGATGGTCCTTGCATAACCATTCAAAATGTCAGTAACATTATCATACATAA CATCTACATACATGGCTGTGTACCAGGAGGAAATGCCATTGTAAGAGACTCCACAAAGCATTACGGTTTGAGAGGTAATTCAGATGGGGATGGGATATCG ATATTTGCGGCTAGGGATGTGTGGATTGATCATTGTACACTAGCTAATTGCCATGACGGACTGATAGATGCTGTATTTGGCTCAACATCTATAACAATCT CAAACAACTACATGTTCAATCATAATGAGGTTATGCTTATGGGTCATAGTGATGATTTTCTTGATGACAAGAATATGCAAGTCACAATTGCCTTCAATTT TTTTGGTGAAAATCTGGTTCAAAGAATGCCCAGGTGCAGGCATGGTTATTTTCACATTGTGAATAATATATATACTGGTTGGGAGAAGTACGCAATTGGT GGAAGCGCCGATCCAACAATCAACAGCCAAGGGAATGTTTTTATGGCATTAGACAACAGTGACACTAAGGAGGTGACTTGGCATGAAAGCTTGACTGGAT TTGAGGAGTGGAAGAGCTGGAACTGGAGATCAGATGGAGACATGATGCTCAACGGTGCTTTCTTCACGCCTTCTGGCCAGAAAAGTTCTGCAAGCTACAT AAAAGCATCAAGCATGGTAGCAAGACCAGCTTCATATTTAACAAACATGTCCCCGCAGGCTGGAGCTCTTAATTGCCAGAAGGGTTACCAATGTTGA
AA sequence Show only first row Show all	>Potri.011G093400.2 pacid=42780685 polypeptide=Potri.011G093400.2.p locus=Potri.011G093400 ID=Potri.011G093400.2.v4.1 annot-version=v4.1 MPTFSLFFLVLISHATITFSRHPLLRISEATKWSSTRRQLGNDACRTGNPIDDCWRCDPDWETNRKVLADCAIGFGRNAVGGRDGNLYVVTNSDNDDPVN PIPGTLRYGVIQEEPLWIIFDQDMVINLKEELIMNSHKTIDGRGHNIQIADGPCITIQNVSNIIIHNIYIHGCVPGGNAIVRDSTKHYGLRGNSDGDGIS IFAARDVWIDHCTLANCHDGLIDAVFGSTSITISNNYMFNHNEVMLMGHSDDFLDDKNMQVTIAFNFFGENLVQRMPRCRHGYFHIVNNIYTGWEKYAIG GSADPTINSQGNVFMALDNSDTKEVTWHESLTGFEEWKSWNWRSDGDMMLNGAFFTPSGQKSSASYIKASSMVARPASYLTNMSPQAGALNCQKGYQC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63180			Pectin lyase-like superfamily ...		Potri.011G093400 [exp]	0	1
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Potri.001G403900 [exp]	1.00	0.8870
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Potri.004G160100 [exp]	20.85	0.7827	Pt-PAP.2
AT2G28410			unknown protein		Potri.009G013800 [exp]	30.57	0.7739
AT2G03810			18S pre-ribosomal assembly pro...		Potri.015G048400 [exp]	31.84	0.8062
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Potri.008G092300 [exp]	34.35	0.7192
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Potri.014G146600 [exp]	37.50	0.7460
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Potri.017G013400 [exp]	50.64	0.7547
AT4G24250		ATMLO13, MLO13	MILDEW RESISTANCE LOCUS O 13, ...		Potri.003G151750 [exp]	58.92	0.7316
AT1G54820			Protein kinase superfamily pro...		Potri.013G025700 [exp]	60.66	0.7897
AT3G28760			unknown protein		Potri.017G080300 [exp]	65.95	0.7198

Compare expression of checked genes

Potri.011G093400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.