Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55830 848 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 555 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 542 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 393 / 4e-127 Concanavalin A-like lectin protein kinase family protein (.1) AT5G42120 381 / 2e-122 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 365 / 2e-116 RLK receptor lectin kinase (.1) AT3G53810 357 / 2e-113 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 357 / 4e-113 Concanavalin A-like lectin protein kinase family protein (.1) AT5G10530 347 / 5e-110 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 347 / 1e-109 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G368300 [exp] 1143 / 0 AT5G55830 853 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G130000 [exp] 570 / 0 AT3G53380 866 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G087800 [exp] 568 / 0 AT3G53380 881 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.005G189500 [exp] 408 / 7e-133 AT5G42120 671 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 398 / 1e-128 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 398 / 1e-128 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 397 / 2e-128 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.008G058400 [exp] 396 / 2e-128 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 395 / 6e-128 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016620 [exp] 855 / 0 AT5G55830 826 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10019923 [exp] 573 / 0 AT3G53380 927 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10026493 [exp] 537 / 0 AT3G53380 872 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10022520 [exp] 508 / 1e-174 AT5G55830 494 / 5e-170 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029769 [exp] 411 / 8e-134 AT5G42120 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10042795 [exp] 410 / 1e-133 AT5G42120 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 394 / 5e-127 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 384 / 3e-123 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10010867 [exp] 377 / 9e-121 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040276 [exp] 373 / 2e-119 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.011G093700.1 pacid=42782103 polypeptide=Potri.011G093700.1.p locus=Potri.011G093700 ID=Potri.011G093700.1.v4.1 annot-version=v4.1 ATGTCTTTCAACCGCTTAAACCCCCATCTTCCCTTGGCAAATCCTATAACTCGTTCAAGAAATCAAAAAACAACAAGTCTACCGTTTAAGAGAAACAAAT TTCTCTTTTTCCATCTCGAACTCGCTCTTAAAACTTTAACAAGAGAGACAAAACCCTATCAAGATTCAGTGACTATGAGTCCAAGAAAGATACAATTTTG CATCTTCCTCTTCATTCTCTTCAACTTGAAAGTTTCCCCTCTTGTGTTAGCAAGCAGTAGCAATGTAAGTTTTGAGTTCCCTTCTTTCAATCTCCGGAAT CTCACTCTCCTTGGTGACTCTTATCTCCGGAATGGTGTCATTGGCCTCACCCGTGATGTCACGGTGCCTTCTTCAAGTTCAGGCACTGTAGTCTACAACA ACCCTGTTCCCTTTTTTGATCAAGAATCCAATACCACAGCTTCTTTCTCAACAAGGTTCAGTTTTTCTATCCTTGGTGTCAATGAAAACTCTTATGGTGA TGGTTTGTCTTTTTTTCTCTCACAAGATAACCAAACTCTTGGTAGCCCCGGAGGGTACTTGGGTCTCGTTAATTCTTCTCAGTTGACCAAGAACAAGTTT GTAGCGATTGAGTTTGACACCAGGCTTGATGCCCATTTCAATGATCCAAATGACCACCATGTTGGTTTAGACATTGATAGCCTTAATTCAATCAAGACTG CTGATCCAATCTTGCAAGATATTGATTTGAAGAGTGGAGATTTGATCACATCTTGGATTGATTACAAGAATGATTTGAGGGTCTTGAAAGTCTATATGAG TTATTCAAGTTTGAAACCAGGAAATCCCATACTAACTGTAGACATCGATCTCTCTGAGTATCTTAAAAGGGATATGTATGTGGGGTTTTCAGGTTCTACA GAAGGAAGCACTGAGCGTCACTTGATTGCAAATTGGAGCTTTAGAACCTCTTGGTTCCTTCCTGTGAATCCAAATTCAAATCGTCACAATGTATCTGATA GTTCAGTGACTGTAACAACACCAGTTATTCCTATATCAAATGCTGCGAATAAACGTCACAAGAGACTTGGTTTGGGTCTTGGGATTGCTGGTCCGGCTTT CTTTTGTGCGTTCCTAGTGGCTTTTGGTTATTTTTCTGTCAGGAAGTGGCAGAAGATCAAAAGAGTCAAGAGCCTGAAAGCAGAGCTAGTGACAGGGCCA AAGGAATTCAGTTACAAAGAGTTGAAGTTAGCCACGAGAGGGTTTCATTCAAGCAGAATAATAGGTAGAGGTGCATTTGGCAATGTCTACAAGGCCCTCT TCAACTCTTCGGGTACCCTTGCTGCGGTGAAAAGATCGAAGCATTCCCATGAAGGTAAAACTGAATTCCTTGCTGAGTTGTCAATTATAGCATGCCTGAG GCACAAGAATTTGATTCCACTACTAGGTTGGTGCGTTGAGAAGGGTGAAGTGCTGCTTGTATATGAATTTATGCCATATGGGAGCCTTGATAGGATGCTA TATGAAGAAGGTTCTGAGCTAGGAATATTTTTAAACTGGGCACATAGGCAAAAGATTGCAGTTGGCTTGGCCTCTTCGTTAACATATTTGCATCACGAAT GCGAGCAGCAAGTCATTCATAGAGATATAAAGACTAGTAACATAATGCTGGATGGAAACTTAAATGCAAGGCTGGGTGATTTTGGATTGGCAAGGCTAAT GGAGCACGACAAGAGTCCTGCATCAACGCTTACTGCTGGGACAATGGGATACTTAGCTCCTGAGTATCTTCATTATGGGAAAGCAACGGAGAAAACTGAT GTTTTTAGTTATGGAGTGGTGATACTTGAACTGGTTTGCGGTAAGAGGCCCATTGAGAGAGAACCAGTCAGCCAAAAAATGGTGAATTTAGTTGACTGGG TATGGGGATTGTATGGTGAGGGAAATATAATTGAAGCAGCTGATCCTAGGTTGAATGGGGAGTTTGAGGAAGAAATGAGGAAGCTATTACTTGTGGGTTT GAGTTGTGCTAATCCGGACAGTACAGGGAGGCCTACGATGAGAAGAGTCCTTCAAATCCTCAATGGTGAGGCCGAGCCTATTGCTGTGCCGAGGAAGAAG CCGAGCCTCACATTCTCTTGCGGCCTTGCATTGACGCTTGAGGACATTTTTTCTAACTGTGATTAG
AA sequence Show only first row Show all	>Potri.011G093700.1 pacid=42782103 polypeptide=Potri.011G093700.1.p locus=Potri.011G093700 ID=Potri.011G093700.1.v4.1 annot-version=v4.1 MSFNRLNPHLPLANPITRSRNQKTTSLPFKRNKFLFFHLELALKTLTRETKPYQDSVTMSPRKIQFCIFLFILFNLKVSPLVLASSSNVSFEFPSFNLRN LTLLGDSYLRNGVIGLTRDVTVPSSSSGTVVYNNPVPFFDQESNTTASFSTRFSFSILGVNENSYGDGLSFFLSQDNQTLGSPGGYLGLVNSSQLTKNKF VAIEFDTRLDAHFNDPNDHHVGLDIDSLNSIKTADPILQDIDLKSGDLITSWIDYKNDLRVLKVYMSYSSLKPGNPILTVDIDLSEYLKRDMYVGFSGST EGSTERHLIANWSFRTSWFLPVNPNSNRHNVSDSSVTVTTPVIPISNAANKRHKRLGLGLGIAGPAFFCAFLVAFGYFSVRKWQKIKRVKSLKAELVTGP KEFSYKELKLATRGFHSSRIIGRGAFGNVYKALFNSSGTLAAVKRSKHSHEGKTEFLAELSIIACLRHKNLIPLLGWCVEKGEVLLVYEFMPYGSLDRML YEEGSELGIFLNWAHRQKIAVGLASSLTYLHHECEQQVIHRDIKTSNIMLDGNLNARLGDFGLARLMEHDKSPASTLTAGTMGYLAPEYLHYGKATEKTD VFSYGVVILELVCGKRPIEREPVSQKMVNLVDWVWGLYGEGNIIEAADPRLNGEFEEEMRKLLLVGLSCANPDSTGRPTMRRVLQILNGEAEPIAVPRKK PSLTFSCGLALTLEDIFSNCD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55830			Concanavalin A-like lectin pro...		Potri.011G093700 [exp]	0	1
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.011G112900 [exp]	6.32	0.6814
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.011G113300 [exp]	12.96	0.6646
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Potri.014G043600 [exp]	20.04	0.6175	Pt-ADL4.1
AT1G14810			semialdehyde dehydrogenase fam...		Potri.008G135700 [exp]	20.32	0.6733
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Potri.010G055400 [exp]	36.52	0.6212	Pt-GAPDH.3
AT5G26360			TCP-1/cpn60 chaperonin family ...		Potri.004G133800 [exp]	47.94	0.6583
AT4G39840			unknown protein		Potri.005G076500 [exp]	53.44	0.5724
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Potri.006G028700 [exp]	55.64	0.6160
AT1G64760			O-Glycosyl hydrolases family 1...		Potri.019G032900 [exp]	56.38	0.6652
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Potri.015G009300 [exp]	145.82	0.6097

Compare expression of checked genes

Potri.011G093700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.