Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55860 4187 / 0 UPL1 ubiquitin-protein ligase 1 (.1.2) AT1G70320 4146 / 0 UPL2 ubiquitin-protein ligase 2 (.1) AT3G17205 241 / 2e-64 UPL6 ubiquitin protein ligase 6 (.1.2.3) AT3G53090 212 / 8e-55 UPL7 ubiquitin-protein ligase 7 (.1.2) AT4G12570 172 / 6e-43 UPL5 ubiquitin protein ligase 5 (.1) AT5G02880 154 / 1e-36 UPL4 ubiquitin-protein ligase 4 (.1) AT4G38600 120 / 1e-26 UPL3, KAK UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G368600 [exp] 6147 / 0 AT1G55860 4297 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.002G110500 [exp] 1066 / 0 AT1G55860 1125 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.010G150000 [exp] 242 / 1e-64 AT3G17205 1506 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.008G101300 [exp] 236 / 9e-63 AT3G17205 1432 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.016G096500 [exp] 217 / 2e-56 AT3G53090 1447 / 0.0 ubiquitin-protein ligase 7 (.1.2) Potri.006G011701 [exp] 174 / 2e-43 AT4G12570 842 / 0.0 ubiquitin protein ligase 5 (.1) Potri.016G012900 [exp] 171 / 2e-42 AT4G12570 853 / 0.0 ubiquitin protein ligase 5 (.1) Potri.009G134300 [exp] 130 / 1e-29 AT4G38600 2234 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Potri.006G132000 [exp] 126 / 2e-28 AT5G02880 1614 / 0.0 ubiquitin-protein ligase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032589 [exp] 4812 / 0 AT1G55860 4402 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10032830 [exp] 1075 / 0 AT1G55860 1189 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10002605 [exp] 1064 / 0 AT1G55860 1128 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10035589 [exp] 206 / 6e-53 AT3G53090 1385 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10010493 [exp] 185 / 8e-47 AT4G12570 830 / 0.0 ubiquitin protein ligase 5 (.1) Lus10017098 [exp] 171 / 2e-42 AT3G17205 1249 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Lus10008636 [exp] 161 / 6e-39 AT3G53090 1270 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10019908 [exp] 148 / 7e-35 AT4G38600 1545 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Lus10003792 [exp] 130 / 6e-32 AT4G12570 409 / 3e-136 ubiquitin protein ligase 5 (.1) Lus10027841 [exp] 118 / 9e-26 AT4G38600 2482 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [poplar] [flax] UBA PF00627 [poplar] [flax] UBA UBA/TS-N domain CL0552 [poplar] [flax] Hect PF00632 [poplar] [flax] HECT HECT-domain (ubiquitin-transferase) CL0552 [poplar] [flax] PF06012 [poplar] [flax] DUF908 Domain of Unknown Function (DUF908) CL0552 [poplar] [flax] PF06025 [poplar] [flax] DUF913 Domain of Unknown Function (DUF913) CL0552 [poplar] [flax] PF14377 [poplar] [flax] UBM Ubiquitin binding region
Representative CDS sequence Show only first row Show all	>Potri.011G094100.1 pacid=42782381 polypeptide=Potri.011G094100.1.p locus=Potri.011G094100 ID=Potri.011G094100.1.v4.1 annot-version=v4.1 ATGACAAAGCTTAAGAAACGGAGGTCTACAGAAGTGCCTCCCAAAATTAAGTCCATCATCAATGGTGTTATTACCAGTCCACTTGAGAATATAGAAGAAC CCCTAAAAGGTTTTGTTTGGGAGTTCGATAAGGGAGATTTTCATCATTGGGTTGATCTTTTTAATCATTTTGATTCATATTTTGAGAAGCACATAAAGCC AAGAAAAGACTTGCAGGTTGAGGACAACTTCTTGGAATCTGATCCTCCCTTTCCAAGAGAAGCTGTTCTTCAAATTCTTCATGTTATCAGAATAATTTTA GAGAACTGCACAAACAAGCACTTTTATAGTTCTTATGAGCAGCATCTTTCTAACCTTCTTGCTTCCACTGATGCGGACATAGTAGAGGCTTGCTTGCAGA CTCTGGCAGCATTTTTGAACAAGACTCTTGGAAGATATTCCATTAGAGATTTGTCTTTGAATACAAAGTTATTTTCTCTTGCACAAGGCTGGGGAGGAAA GGATGAGGGTCTTGGATTGGTTGCGTCTACTACACAAAATGGATGTGACCCTGTTGCTTACGAGTTAGGTTGCACCCTTCATTTTGAGTTCTATGCATTG AACGAGTTGTCAAGTCAGTTCAGTGCCATAGAACAGCCAACTCAGGGTTTACAAATTATTCATTTACCTAATGTCGATACTTGTCCAGAGACAGATTGTG AGCTTTTGAATAAGTTAGTTGTAGAATATAAAGTACCTCCCAGCTTAAGATTTTCTTTACTGACGAGATTGCGGTTCGCAAGGGCTTTTCGCCCTTTGGT TTCTCGCCATTTGTACACATGCATCCGTTTGTATGCTTTCATTGTTCTTGTTCAAGCAAGCAGTGATGCTGATGATCTAGTTTCTTTCTTCAACTCTGAG CCTGAGTTTGTCAATGAATTAGTTTCACTTTTGAGTTATGAAGATGAAGTGCCTGAGAAAATTCGAATTCTTTGTTTGTTATCATTGGTCGCTCTTTCTC AAGATCGGTCCCGCCAATCAACTGTCTTGGCTGCTGTCACATCTAGTGGTCACCGCGGCATCCTGTCCAGCCTCATGCAAAAAGCCATTGATTCTGTTAT CAGTGATTCATCAAAATGGTCTGTTGATTTTGCTGAAGCTCTACTGTCTCTTGTCACTGTTTTGGTCTCATCATCATCAGGTTGCTCAGCCATGCGCGAG GCAGGGTTTATTCCTACTCTTCTACCCCTCCTCAAAGATACAGACCCTCAGCATTTGCATTTGGTAGCCGCCGCTGTGCATATTCTAGAGGCATTCATGG ATTACAGTAATCCTGCTACTGCATTATTCAGAGAGTTGGGTGGTTTGGATGACACCATCTCTCGACTGAAGGTAGAAGTGTCTCATGTAGAAGATTGTAA GCAACAAGGTGAAGATTCTGATTCAAGGACAAGGAATTTGCAAGTAGCTGCAAGTGCTTCCTCAGAGCTAGATAGTATGCTCCCACTGTATTCTGAAGCA TTAGTTGCGTATCATCGACGTTTACTGATGAAAGCTTTGCTAAGGGCGATATCCCTCGGAACATATGCTGCTGGGAACACTTCTCGTATTTATGGATCCG AGGAGAGTTTGTTGCCCCAATGCCTATGTCTAATCTTCAGAAGAGCAAAAGATTTTGGTGGAGGGGTGTTTTCACTTGCAGCAACTGTCATGAGTGATCT AATTCACAAAGATCCTACCTGTTTCCCTATCTTAGATGCAGCTGGTCTTCCTTCTGCTTTTTTGAATGCAATAATGGATGGTGTTCTATGCTCTTCAGAA GCCATAATGTGTATACCTCAGTGTTTGGATGCCCTATGCCTGAATAATAATGGTCTTCAGGCTGTAAAGGATCGGAATGCTCTAAGGTGCTTCGTGAAAA TATTTACATCCAAAACGTATTTGCGTGCCCTTTTTGGTGAGACACCAGGGTCCTTGTCTACTGGACTAGATGAACTCATGCGCCATGCTTCCTCATTACG AGGACCTGGAGTGGATATGTTGATTGAGATCCTAAATGTCATTACAAAAATTGGGTCTGGGGTCGATGGTTCTTGCGCATCCACTGATCCATCCTGCTCT GCTCCTGTTCCAATGGAAACTGATGCTGAAGAAAGGAGTCTGGTTCTGTCAGATGATAGGGGAAGTTTCAGGATGGAAACCTTGGAGCAGACCACTGAGC AGTCATCTGATACTTCAGCAGCAAATATTGACTCACTTTTTCCTGAATGTTTAAGCAATGTTGCTCGTCTTCTTGAAACAGTTCTCCAGAATTCTGACAC ATGTCATATATTTGTTGAGAAGAAGGGAATTGATGCTGTTCTGCAGTTGTTTACTTTGCCTTTAATGCCTATTTCAACATCGATTGGTCAGATCATATCT GTTGCGTTTAAGAACTTCTCACATCAGCATTCTGCTTCCTTGGCTAGGGCAGTATGTGCCTTCTTGAGAGAACATCTAAAATCAACAAATGAACTATTAG TTTCAGTTGCGGGGACTCATCTTGGTGTGGTTGAATCTGCTAAGCAAGCTAAGGTTCTGAGATATCTTTCCAGCCTTGAAGGTATACTTTCTCTCTCGAA TTTTTTGTTGAAGGGGAATAGTACTTTTGTCTCTGAATTGGGCACTGCAGATGCTGATGTGTTGAAGGATATTGGGATGGCATACCGGGAAATAATTTGG CAAGTTTCTCTGTATAATGACTCCAAAGTGGATGAAAAGAGAAATGCAGAACAAGGGACTGACCTGTCTTCATCAACTGCTGTGGTAAGAGAAAGTGACG ATGACGCAAACATTCCAGTTGTGAGATACATGAACCCAGTTTCTATTAGGAATGGTTCTCAGTCCCTTTGGGGTGGGGAACGTGAATTTCTCTCGGTCAT TCGTTCAGGTGAAGGCTTGCACCGCCGCAGTCGACATGGCTTGGCACGTATACGAAGTGGGAGGACTGGTCAGCACTTGGATGCTTTAAGCATTGACTCT GAGATCCCATCAGATGAACCAGAGACATCTTTGCCAAAGTTGAAAAGTAGAACTCCTGATGAGATTCTAAACAAATTGGCTTCTTTATTACGTTCTTTCT TTTCTGCCCTTGTGAAGGGATTTACATCTCCAAACCGTCGAAGGGCTGATGTAGGGTTGTTGAGTGCAGTTTCAAAGACCCTTGGAACTACCTTGGCTAA AATATATCTTGAGGCTCTCAGCTTCTCAGGGTATTTTACTGCTGGACTTGATACATCACTGTCAGTTAAGTGCCGATATCTTGGAAAGGTTGTTGATGAC ATGGCAGCCCTCACATTTGACAGCAGGAGGCGTACTTGTTATGCATCAATGGTCAATAATTTTTATGTACATGGAACCTTTAAGGAGCTGCTTACTACAT TTGAAGCTACAAGTCAACTGTTATGGACACTACCTTACCCTTTTCCTTGCCCCTCAGTTGACCATGAGAAGGCAGGTGAAGGAAATAATTTGTCTCACAG CACATGGCTACTTGACACTTTACACAGCTACTGCCGTGTGCTCGAGTATTTTGTTAACTCCACTCTGCTTTTATCTTCAACATCTGGATCCCAAGTTCAA CTACTTGTTCAGCCTGTTGCAGCTGGTTTGTCAATTGGGCTATTTCCTGTTCCTAAGGACCCTGAAGTCTTTGTTCGCATGCTGCAGTCTCAGGTTCTGG ATGTCATGTTATCTGTCTGGAACCACCCGATGTTTCCAAGTTGCAGCACTGGCTTCATTTCTTCTATTGTGTCACTTGTTACACACATATACTCTGGTGT TGGAGATGTCAAAAGGAATCGAAGTGGCATTGCAGGAAGTACAAACCAAAGGTTCATGCTCCCACCACCTGATGAAAATACAATTGCTATGATTGTTGAG ATGGGCTTTACAAGGGCAAGAGCTGAAGAGGCATTGAGACGGGTGGAAACAAATAGTGTTGAAATGGCCATGGAGTGGCTGTTTAGTCATGCTGAGGATC CTGTGCAGGAGGATGATGAGTTAGCTCGGGCACTTGCGCTATCACTAGGAAGTTCATCTGAAGGGTTGAAAATTGACGATGAGGATAATTCAATAGATGC CGTGACAGAAGAAGGACAAATGACGGTGCCTCCTGTTGAAGATATTCTTGCTGCATCTGTGAAGTTGTTTCAGAGTAGTGATACGATGGCATTCTCGTTG ACGGATTTGCTTGTGACCCTTTGCAATCGGAACAAAGGAGAAGACCGTCTAAAGGTGGCATCTTATCTTATTGAGCAGCTAAAGCTTTGCCCATTGGATT TTTCCAAGGATTCCAGTGCACTGTGTATGATATCACATATTTTAGCATTGCTCCTTTTTGAGGATGGAACTGTTCGAGAAATTGCCGCACAGAATGGTAT AGTTGCTGCTGTAACAAATGTCTTGATGAATTTCAAGGCTAGAAATGCATCAGGGAGTGAAATTCTTATCCCAAAATGCATTAGTGCTTTACTGCTCATC TTGGATAACATGTCGCAATCCAGGCCTAGAATCTCTTCTGAAACTACCGGAGGAACCCAGACAGTATCTCTGCCTGACTCATCAGTTCTGGCATCAGGTA CAGAAAAAAACGTGGCTTCAGACTTTCCCGAGAAAGAATCTGGCACAGCACTTGAGAAATTATTGGGGAAGTCAACTGGTTACCTGACTATTGAAGAGAG TCGTGAAGTACTACTTGTTGCCTGTGACTTGATGAAACAGCATGTTCCTGCTGTGATCATGCAGGCTATCCTGCAGTTATGTGCTCGCCTGACAAAAACT CACATTTTAGCATTGCAATTTCTTGAAAATGGAGGGTTAACTGCTCTATTTAGTATTCCACGAAGTTGTTTCTTCCCTGGATATGACACTGTTGCATCTG CCATCATTCGGCACCTCCTTGAAGATCCTCATACCCTACAAACTGCCATGGAATTGGAGATACGTCAAACTTTGATCGGAAATCGCCATGCTGGGCGTAT TTTCCCAAGGACATTTTTGACATCTATGGCACCTGTTATTTCCAGAGATCCTGTGGTTTTTATGAAAGCTGCAGCTGCAGCTTGTCAGTTGGAATCATCA GGAGGGAGGACTTTTGTGGTATTATTGAAGGAAAAAGAGAAGGAAAGGGACAAATCAAAAGCTTCAGGTGCTGAAGAATCTGTCCGGATTTCTGAGAATA AGATGCATGATGGTTCAGGTAAATGTGCCAAAGGCCATAAAAAGATTCCGGCCAATCTTACTCAAGTAATGGACCAGCTTCTTGATATAGTTCTGAAACA TCCATTGCCAAAAAGTCCAGAAGGTTGTGTTGGTGATTTAAATTCGATGGATGTGGATGAACCTGCTACCAAGTTAAAGGGAAAATCCAAGGTTGACGAG ACAAAGAAAGTGGAGTCTGAATCTGAAAGATCTGCTGGACTGGCTAAAGTGACTTTTGTTCTCAAGTTGTTGAGTGATGTTCTTCTTATGTATGTGCATG CAGTTGGGGTCATACTGAGACGAGACTTGGAATTGTGTCATCTGCGGGGATCTAATCAAACAGATAGTTCTGGGCAAGGTGGGATAATTCATCACATCTT ACACCAGTTGCTTCTAATATCTACAGATAAATCTGCAGGACCTGATGAATGGAGGGACAAATTATCTGAAAAAGCTTCTTGGTTCATTGTTGTTTTGTGT GGCCGATCTGGTGAAGGGCGGAGGCGAGTGATTAATGAACTTGTGAAAGCTATGTCTTCATTCTCAAACTTGGAGAGCAATTCACACAACAACGTTTTGT TGCCTGATAAAAAAGTTTTTGCTTTTTCTGATTTGGTGTATTCAATTTTGTCTAAAAATGCATCCTCCAGCCACTTACCTGGTTCCGGATGCTCACCGGA TATAGCAAAAAGCATGATAGATGGAGGAATGGTGCAGTCTCTTACTAGCATTCTTCAAGTGATTGATTTGGACCATCCTGATGCTCCTAAAATTGTCAAT CTTCTATTGAAGGCTTTGGAAAGTCTGTCAAGGGCTGCCAATGCTAGTGAGCAAGTTCTTAAATCTGTGGGTCTGAACAAGAAGAAAACAACTGTGTCAA ATGGAAGATGTGATGAACAGACAGCTGCATCAGCTGTGGAGACCATAGAGCATAATCAGAATAGCGGTGCCACACAGGAAGCCCCAGATGAGGAGGATAC TGACATTCAGCAACAGCAAGGAACTACTCATGTTGAGGGTAATCATGCTGCACATCAAAATCAGCCAGCAGAGCAAGACATGAGGATAGAGTCGGAAGAT ACAATGCCAACCAATCCATCGGTGGAGATTGGAATGGATTTCATGCATGAAGAAATGGAAGAGGGTGGTGTGTTACACAACACTGACCAAATTGAGATGA CTTTTCGTGTTGAGAACAGGGCTGGTGATGATATGGGTGATGAGGATGATGACATGGGAGATGATGGTGGCGAGGATGAGGATGAGGATGATGATGAGGG GGAGGATGAGGATATCACTGAAGATGGTGCTGGCATGATGTCTCTTGCTGACACTGATGTGGAAGATCATGATGATACTGGCTTGGCAGATGACTATAAT GATGAGATGATTGACGAAGATGATTTTCATGAGAATCGTGTTATAGAGGTCAGGTGGAGGGAGGCCCTTGATGGGTTGGATCATTTGCAGGTACTCGGTC AGCCTGGAGCTTCAAGTGGTCTGATTGATGTTGCTGCTGAGCCATTTGAAAGGGTGAATGTGGATGATCTTTTTGGTCTTCGCAGGCCTTTGGGTTTTGA TCGTCGACGTCAGAGTGGCAGGTCTTCCTTTGAGCGGTCTGTCACAGAAGCAAATGGATTTCAGCATCCTCTGCTGTTAAGGCCATCCCAGTCAGAAGAT CTGGTTTCTATGTGGTCATCAGGTGGGCATTCATCCAGGGGTTTAGAAGCTTTGTCATATGGGAGCTTTGATGTACCTCATTTTTATATGTTTGATGCTC CTGTTCTTCCATTTGAACATGTACCTAGTAGTATATTTGGTGATCGTTTGGGTAGGGCAGCACCCCCACCTTTGTCTGATTCTTCTTTAGGAATGGACTC GTTGCATACACAGGGGCGGAGAGGGCCTGGTGATGGAAGGTGGACTGATGATGGTCAGCCACAAGCAGGTGCCCGATCTGCTGCAATTGCACAAGCAATA GAGGAGCAGTTCATATCACAGCTGTGCAGTGTACCTACAACCAATGCTCCCATTGAGAGGCAGGTCCAGAATTCAGGAGTCCAGGAGAATCAACCATTTC ATAATCCTCCATCCAATGATGGTCAAGTAGTGGTGGATGATGATAACACCAGCAGTCAACAAAATGAAGTTCAGCAAGGAAATGGCAATGAAGTTACCCA CTATCAGCCTAATCCAACAGCTGAAACCATTCCTTCCAATGAGCAGGTTGATTCTCGGTCTTCATTCAGTGATTCAGGTGAAGATTTACAGGTGGATGAA CCTATGTTAGCTCAACCAATTTCTCTGAACAGTACACCAAATGGTCTTGACAACATGGAAATTGGAGATGGTGATGGCACTGCATGTGATCAAGTCGAGA CAATGCCAGAGAATGTCAACTCTGCAGAACATCATGCTTCTTTGCAATGTGAAGGGGTCCCTGAAGCACATGCAAGTCTCAATGATGTGCCTGTTCAGGA TGTCAGATCCTCAACAGATGATCAGTGCAATAATCCTTTGTTGGCCAATTCTGTTTCAATGATGCCTGATGTGGATCAGATGAATGCTGATGTTGAAATG ACTGGTGCTGATGCTGAAGGAAATCGGCCTGGGCAATCCATGCCTGCTTCTGAACAAGGTGCTGACGAGACATCATCCAGGCAAGAGACATTGGTTGCTC AGGATGCTACTCAGGCTAACCAAAATGGTATAGATAATGAGACTCCCACTACAAGCGCAATTGACCCAACTTTCCTGGAGGCATTACCTGAAGATTTACG AACAGAAGTTCTAGCTTCCCAGCAGGCTCAGTCTGTTCAACCTCCAACTTATGCTCCACCTTCTGTTGAAGATATTGATCCTGAATTTTTGGCTGCTCTT CCTCCAGACATCCAAGCAGAGGTTTTGGCACAACAACGAGCACAGCGGATTGCACAGCAGGCTGAAGGACAGCCTGTTGACATGGATAATGCTTCAATAA TTGCTACTTTTCCTGCTGATGTGCGTGAAGAGGTGCTTTTGACTTCTTCAGAAGCAGTATTATCAGCATTACCTTCTCCATTACTTGCCGAAGCCCAAAT GCTAAGGGACCGAGCAATGAGTCACTATCAGGCTCGCAGCCTGTTTGGTAGTAGCCACAGGCTAAATAGTCGTAGAAATGGTTTGGGATTTGATAGGCAG ACAGTGATGGACAGGGGTGTTGGAGTTACAATTGGACGGAGGGCTGCTTCTGCTTTTGCAGATGGCATGAAGATGAATGAAATTGAAGGCGAGCCACTTT TGGATACCAATGCATTGAAAGCTTTGATCCACCTGCTAAGGATGGCACAGCCCCTCGGGAAAGGCCTTCTACAGAGACTTCTGCTAAACCTTTGTGCACA TAGTACTACAAGGACAAGTTTAGTTTGTCTCTTGCTCAATATGATTAAACCCGAGGCTGAAGGGTCAGTCAGTGGATTGGCAGCAATTAACTCCCAGAGG CTTTATGGTTGTCAGTCAAATGTTGTTTATGGTCGATCGCAGTTGATGGATGGTCTTCCTCCCTTGGTTTTGCGTCGAGTTCTGGAAATCTTGACCTATT TGGCTACAAATCATTCTTCTATTGCCAATATGTTGTTCTACTTTGATCCCTCAATTGTTCTGGAGCCTCTAAGTCCAAAATATCTGGAAACCAAGATTGA TAAAGGCAAGGAGAAAATTGGAGATGGAGATAATTCGTTAAAACCTTTGGGCGATACTGATAATGTTCCTTTGATCCTTTTTCTGAAGCTGTTGAATCGA CCACTTTTTCTACACAGCACTACTCATCTTGAGCAGGTCATGGGATTGCTTCAAGTAGTAGTTTTCACGGCAGCATCAAAATTAGACACTCATGCCCAAT CTGGACAGGCAAGGGAGAATTCTCAAAAACAAACTGCCGGTGAAGTTCCTGGTGGTGTTCAAAGTGTTCCGCCATTGGTAGCAGAATCAAGTCAAGAGGA CAAGGCTGCCAGTTCTGGGTCCATTTCTAATGGAAATAGGAGCATTGATGCATGCAGTGTTTTCTTGAAGTTACCACAACCTGAGTTGAGCAATCTGTGC AGCCTTCTTGGTTGTGAAGGGCTGTCAGATAAAGTATATATGCTAGCTGGAGAAGTGCTTAAGAAGTTGGCCTCAATTGTTGCAACCCATCGTAAATTCT TTACTTCAGAGCTTTCAGAATTAGCTCATGGGTTGAGCAGTTCAGCTGTCAGTGAGCTTGTCACCTTGAGGAACACTCACATGCTAGGTCTAAGTGCTGG CTCCATGGCCGGGGCAGCAATCCTACGTGTGCTACAGGCACTCAGCTCACTCACCTCACTCACCTCACTCACCTCACCCACTATTGATGAGAATATGGAC CTTGAGAGTGGTGGGGAACAGGAGGAGCAAACTACCATGTGGAACTTAAGTATTGCACTTCAGCCATTGTGGTTAGAATTGAGCGAATGTATTAGTTTGA CAGAGACACAGCTCGTTCAGAGCACTTTCAGTCCAACTGTATCAAATATAAATGTAGGGGAGCTTGTACAGGGGGGCTCTTCTTCATCCCCTCTTCCTCC TGGAACCCAGAGGCTCTTGCCTTTCATTGAAGCTTTCTTTGTTTTGTGTGAAAAGCTACAGGCAAACCAATCCATTGTGCAACAAGATCACGTGACCATA ACCGCGAGAGAAGTCAAAGAATCTTCTGGGAGCTCCTCCTCGACCACTGCATGCTTCGGAGATTCTCAGAGAAAGGTTGATGGTGTTGTCACATTTTCCA GATTTGCAGAGAAGCATCGCCGGCTTTTGAATACTTTTATAAGGCAGAATCCTGGCTTGTTGGAGAAATCACTCTCTATGATGCTGAAGGCTCCCAGACT AATTGATTTTGATAACAAGAGAGCATATTTCCGCTCCAGAATAAGGCAACAGCATGAGCAACACCGTTCTGGTCCACTGCGGATAAGTGTTCGGCGAGCA TATGTTTTGGAGGATTCATACAATCAATTGAGGATGCGACCTACTCAGGATCTCAGGGGAAGATTGAATGTGCAGTTCCAAGGTGAGGAGGGTATTGATG CTGGGGGTTTGACAAGAGAATGGTATCAATTGCTGTCAAGGGTTGTATTTGACAAGGGAGCTTTGCTTTTCACAACTGTCGGGAATGATGTGACTTTTCA GCCAAACCCTAATTCTGTTTATCAGACAGAACATCTGTCTTACTTCAAGTTTGTGGGCCGTGTGGTTTCCAAGGCACTGTTTGATGGGCAACTTTTGGAT GTTTACTTTACTCGGTCTTTCTACAAGCATATTCTTGGTGCAAAGGTGACATACCATGACATAGAGGCTGTTGATCCTGATTATTACAAGAATTTGAAGT GGATGCTGGAGAATGATGTGAGTGATATACCTGACTTGACATTCAGCATGGATGCTGACGAGGAGAAGCACATCCTTTATGAGAAAACTCAGGTTACTGA TTATGAGCTTAAACCTGGAGGAAGAAACATAAGGGTTACTGAAGAAACAAAGCATGAGTATGTAGACCTTGTTGCTGATCATATATTGACAAACGCCATT CGTCCTCAGATTAATTCCTTCCTAGAAGGTTTTAATGAATTGGTGCCAAGGGAACTTATTTCCATTTTCAATGATAAAGAGCTTGAGCTACTAATCAGTG GACTTCCTGAAATTGATTTGGATGATCTGAAGGCCAACACTGAGTATACTGGCTATACTCCAGCATCTGGTGTTGTTCAATGGTTTTGGGAGGTTGTCAA AGGTTTTAACAAGGAAGATATGGCCAGACTACTGCAGTTCGTCACTGGAACATCAAAGGTTCCATTGGAGGGTTTCAAGGCATTGCAGGGTATCTCTGGT CCCCAAAAGCTTCAGATTCACAAAGCCTATGGGGCTCCTGAGCGTTTGCCTTCAGCTCACACATGCTTCAATCAGCTAGACCTTCCTGAGTATACCTCCG GGGAACAGCTTCAAGAACGCTTGCTGCTTGCTATTCATGAAGCCAGTGAAGGATTTGGCTTTGGTTAA
AA sequence Show only first row Show all	>Potri.011G094100.1 pacid=42782381 polypeptide=Potri.011G094100.1.p locus=Potri.011G094100 ID=Potri.011G094100.1.v4.1 annot-version=v4.1 MTKLKKRRSTEVPPKIKSIINGVITSPLENIEEPLKGFVWEFDKGDFHHWVDLFNHFDSYFEKHIKPRKDLQVEDNFLESDPPFPREAVLQILHVIRIIL ENCTNKHFYSSYEQHLSNLLASTDADIVEACLQTLAAFLNKTLGRYSIRDLSLNTKLFSLAQGWGGKDEGLGLVASTTQNGCDPVAYELGCTLHFEFYAL NELSSQFSAIEQPTQGLQIIHLPNVDTCPETDCELLNKLVVEYKVPPSLRFSLLTRLRFARAFRPLVSRHLYTCIRLYAFIVLVQASSDADDLVSFFNSE PEFVNELVSLLSYEDEVPEKIRILCLLSLVALSQDRSRQSTVLAAVTSSGHRGILSSLMQKAIDSVISDSSKWSVDFAEALLSLVTVLVSSSSGCSAMRE AGFIPTLLPLLKDTDPQHLHLVAAAVHILEAFMDYSNPATALFRELGGLDDTISRLKVEVSHVEDCKQQGEDSDSRTRNLQVAASASSELDSMLPLYSEA LVAYHRRLLMKALLRAISLGTYAAGNTSRIYGSEESLLPQCLCLIFRRAKDFGGGVFSLAATVMSDLIHKDPTCFPILDAAGLPSAFLNAIMDGVLCSSE AIMCIPQCLDALCLNNNGLQAVKDRNALRCFVKIFTSKTYLRALFGETPGSLSTGLDELMRHASSLRGPGVDMLIEILNVITKIGSGVDGSCASTDPSCS APVPMETDAEERSLVLSDDRGSFRMETLEQTTEQSSDTSAANIDSLFPECLSNVARLLETVLQNSDTCHIFVEKKGIDAVLQLFTLPLMPISTSIGQIIS VAFKNFSHQHSASLARAVCAFLREHLKSTNELLVSVAGTHLGVVESAKQAKVLRYLSSLEGILSLSNFLLKGNSTFVSELGTADADVLKDIGMAYREIIW QVSLYNDSKVDEKRNAEQGTDLSSSTAVVRESDDDANIPVVRYMNPVSIRNGSQSLWGGEREFLSVIRSGEGLHRRSRHGLARIRSGRTGQHLDALSIDS EIPSDEPETSLPKLKSRTPDEILNKLASLLRSFFSALVKGFTSPNRRRADVGLLSAVSKTLGTTLAKIYLEALSFSGYFTAGLDTSLSVKCRYLGKVVDD MAALTFDSRRRTCYASMVNNFYVHGTFKELLTTFEATSQLLWTLPYPFPCPSVDHEKAGEGNNLSHSTWLLDTLHSYCRVLEYFVNSTLLLSSTSGSQVQ LLVQPVAAGLSIGLFPVPKDPEVFVRMLQSQVLDVMLSVWNHPMFPSCSTGFISSIVSLVTHIYSGVGDVKRNRSGIAGSTNQRFMLPPPDENTIAMIVE MGFTRARAEEALRRVETNSVEMAMEWLFSHAEDPVQEDDELARALALSLGSSSEGLKIDDEDNSIDAVTEEGQMTVPPVEDILAASVKLFQSSDTMAFSL TDLLVTLCNRNKGEDRLKVASYLIEQLKLCPLDFSKDSSALCMISHILALLLFEDGTVREIAAQNGIVAAVTNVLMNFKARNASGSEILIPKCISALLLI LDNMSQSRPRISSETTGGTQTVSLPDSSVLASGTEKNVASDFPEKESGTALEKLLGKSTGYLTIEESREVLLVACDLMKQHVPAVIMQAILQLCARLTKT HILALQFLENGGLTALFSIPRSCFFPGYDTVASAIIRHLLEDPHTLQTAMELEIRQTLIGNRHAGRIFPRTFLTSMAPVISRDPVVFMKAAAAACQLESS GGRTFVVLLKEKEKERDKSKASGAEESVRISENKMHDGSGKCAKGHKKIPANLTQVMDQLLDIVLKHPLPKSPEGCVGDLNSMDVDEPATKLKGKSKVDE TKKVESESERSAGLAKVTFVLKLLSDVLLMYVHAVGVILRRDLELCHLRGSNQTDSSGQGGIIHHILHQLLLISTDKSAGPDEWRDKLSEKASWFIVVLC GRSGEGRRRVINELVKAMSSFSNLESNSHNNVLLPDKKVFAFSDLVYSILSKNASSSHLPGSGCSPDIAKSMIDGGMVQSLTSILQVIDLDHPDAPKIVN LLLKALESLSRAANASEQVLKSVGLNKKKTTVSNGRCDEQTAASAVETIEHNQNSGATQEAPDEEDTDIQQQQGTTHVEGNHAAHQNQPAEQDMRIESED TMPTNPSVEIGMDFMHEEMEEGGVLHNTDQIEMTFRVENRAGDDMGDEDDDMGDDGGEDEDEDDDEGEDEDITEDGAGMMSLADTDVEDHDDTGLADDYN DEMIDEDDFHENRVIEVRWREALDGLDHLQVLGQPGASSGLIDVAAEPFERVNVDDLFGLRRPLGFDRRRQSGRSSFERSVTEANGFQHPLLLRPSQSED LVSMWSSGGHSSRGLEALSYGSFDVPHFYMFDAPVLPFEHVPSSIFGDRLGRAAPPPLSDSSLGMDSLHTQGRRGPGDGRWTDDGQPQAGARSAAIAQAI EEQFISQLCSVPTTNAPIERQVQNSGVQENQPFHNPPSNDGQVVVDDDNTSSQQNEVQQGNGNEVTHYQPNPTAETIPSNEQVDSRSSFSDSGEDLQVDE PMLAQPISLNSTPNGLDNMEIGDGDGTACDQVETMPENVNSAEHHASLQCEGVPEAHASLNDVPVQDVRSSTDDQCNNPLLANSVSMMPDVDQMNADVEM TGADAEGNRPGQSMPASEQGADETSSRQETLVAQDATQANQNGIDNETPTTSAIDPTFLEALPEDLRTEVLASQQAQSVQPPTYAPPSVEDIDPEFLAAL PPDIQAEVLAQQRAQRIAQQAEGQPVDMDNASIIATFPADVREEVLLTSSEAVLSALPSPLLAEAQMLRDRAMSHYQARSLFGSSHRLNSRRNGLGFDRQ TVMDRGVGVTIGRRAASAFADGMKMNEIEGEPLLDTNALKALIHLLRMAQPLGKGLLQRLLLNLCAHSTTRTSLVCLLLNMIKPEAEGSVSGLAAINSQR LYGCQSNVVYGRSQLMDGLPPLVLRRVLEILTYLATNHSSIANMLFYFDPSIVLEPLSPKYLETKIDKGKEKIGDGDNSLKPLGDTDNVPLILFLKLLNR PLFLHSTTHLEQVMGLLQVVVFTAASKLDTHAQSGQARENSQKQTAGEVPGGVQSVPPLVAESSQEDKAASSGSISNGNRSIDACSVFLKLPQPELSNLC SLLGCEGLSDKVYMLAGEVLKKLASIVATHRKFFTSELSELAHGLSSSAVSELVTLRNTHMLGLSAGSMAGAAILRVLQALSSLTSLTSLTSPTIDENMD LESGGEQEEQTTMWNLSIALQPLWLELSECISLTETQLVQSTFSPTVSNINVGELVQGGSSSSPLPPGTQRLLPFIEAFFVLCEKLQANQSIVQQDHVTI TAREVKESSGSSSSTTACFGDSQRKVDGVVTFSRFAEKHRRLLNTFIRQNPGLLEKSLSMMLKAPRLIDFDNKRAYFRSRIRQQHEQHRSGPLRISVRRA YVLEDSYNQLRMRPTQDLRGRLNVQFQGEEGIDAGGLTREWYQLLSRVVFDKGALLFTTVGNDVTFQPNPNSVYQTEHLSYFKFVGRVVSKALFDGQLLD VYFTRSFYKHILGAKVTYHDIEAVDPDYYKNLKWMLENDVSDIPDLTFSMDADEEKHILYEKTQVTDYELKPGGRNIRVTEETKHEYVDLVADHILTNAI RPQINSFLEGFNELVPRELISIFNDKELELLISGLPEIDLDDLKANTEYTGYTPASGVVQWFWEVVKGFNKEDMARLLQFVTGTSKVPLEGFKALQGISG PQKLQIHKAYGAPERLPSAHTCFNQLDLPEYTSGEQLQERLLLAIHEASEGFGFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.011G094100 [exp]	0	1
AT4G01860			Transducin family protein / WD...		Potri.002G189400 [exp]	1.00	0.8998
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.001G368600 [exp]	3.00	0.8920
AT4G38760			Protein of unknown function (D...		Potri.009G130000 [exp]	3.46	0.8892
AT1G72390			unknown protein		Potri.003G069200 [exp]	4.58	0.8816
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Potri.019G054600 [exp]	5.74	0.8762
AT1G67120			ATPases;nucleotide binding;ATP...		Potri.017G039100 [exp]	5.91	0.8888
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Potri.018G047500 [exp]	6.92	0.8602
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Potri.015G089000 [exp]	8.00	0.8439
AT2G31970		ATRAD50, RAD50	DNA repair-recombination prote...		Potri.001G320300 [exp]	8.71	0.8416	RAD50.1
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Potri.008G080900 [exp]	10.00	0.8796

Compare expression of checked genes

Potri.011G094100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.