Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55180 635 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 604 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT2G05790 587 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G56590 334 / 1e-109 O-Glycosyl hydrolases family 17 protein (.1) AT5G24318 327 / 2e-107 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G07320 325 / 7e-107 O-Glycosyl hydrolases family 17 protein (.1) AT3G13560 326 / 1e-106 O-Glycosyl hydrolases family 17 protein (.1.2.3) AT2G01630 325 / 2e-106 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G29360 325 / 5e-106 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G11820 318 / 2e-103 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G224600 [exp] 622 / 0 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G158400 [exp] 611 / 0 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G247900 [exp] 354 / 4e-118 AT3G07320 653 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.012G017800 [exp] 344 / 4e-114 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.008G055900 [exp] 335 / 6e-111 AT3G55430 494 / 8e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G068600 [exp] 331 / 1e-108 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G086400 [exp] 331 / 2e-108 AT1G66250 741 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G247800 [exp] 328 / 5e-108 AT3G07320 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.001G240000 [exp] 327 / 4e-107 AT5G24318 508 / 2e-178 O-Glycosyl hydrolases family 17 protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018306 [exp] 650 / 0 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040600 [exp] 643 / 0 AT5G55180 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10032562 [exp] 630 / 0 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004391 [exp] 599 / 0 AT5G55180 602 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10015151 [exp] 570 / 0 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10038211 [exp] 332 / 5e-109 AT3G07320 614 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004962 [exp] 331 / 5e-109 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10034607 [exp] 326 / 7e-107 AT2G01630 691 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10039179 [exp] 323 / 4e-105 AT3G13560 634 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10013465 [exp] 318 / 1e-103 AT2G01630 745 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [poplar] [flax] PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.011G094400.2 pacid=42780555 polypeptide=Potri.011G094400.2.p locus=Potri.011G094400 ID=Potri.011G094400.2.v4.1 annot-version=v4.1 ATGACATCTCTCAGTACTTTCACCTTCTCCTTTCTATTACTCTCCTTCTCTCCTTCCTTTTCCTTTTTCTATGCCTTCGCTGCTGGTACGATAGGAGTGA ACTATGGCCGAGTAGCCAACAACTTGCCAGCACCAGCAGAAGTGGTGAGCCTTCTGAAATCACATGGAATCAACAGGATCAAGCTCTACGACACAGACTC AGACGTTTTGACAGCACTCGCCGGCTCGTCGATAAACGTTGTTGTGGCGCTCCCCAACGAGCTCCTCTCCTCTGTTGCTGCAGACCAGTCATTTGCTGAC TCCTGGGTCAAGGGCAACATCTCTCAGCATTTCCCCCAAACAAAGATTGAAGCCATTGCTGTTGGCAATGAAGTATTTGTTGACCCAAAAAACACAACAC CTTTCCTTGTACCAGCCATGAAGAATGTTCACAATTCTCTTGTCAAGTTCAATCTTTCTTCTATTAAAATCTCATCTCCTATCGCTCTCAGTGCGCTTCA AAGCTCCTACCCGTCTTCAGCCGGATCCTTCAAAACCGAATTGATTGGACCCGTTATTAAACCAATGTTGGATTTTCTACGTCAAACCGGGTCATATCTT ATGATTAACGCATACCCTTTCTTCGCATACGCTGCAAACGCTGATGTAATCTCCTTGGATTATGCTTTGCTTAAAGAGAACCAGGGTGTGGTGGATTCGG GTAACGGGTTAAAATACAATAGCCTTTTGGAGGCCCAACTCGACGCCGTTCATGCAGCCATGTCAGCTATTCAATACAACGACGTAAAGATGGTGGTGAC AGAAACTGGATGGCCTTCCTTAGGGGACGAGGATGAGATTGGTGCTGGTGAAGCAAATGCGGCTTCGTATAACGGAAATTTAGTGAAGAGAGTTCTGACA GGAAATGGGACCCCCCTGAGACCGCAGGAACCACTTAACGTTTACTTGTTTGCATTGTTTAATGAGAACGAGAAACCGGGTCCCACATCTGAAAGGAACT ATGGTTTGTTTTATCCAAATGAGAAGAGAGTGTACGACGTCCCGTTTACGCTCGAGCAGTTAGGGAATGGCCAATCAATGCCGGTAAACAAGAGCAACAG TCCGGCCCCGTCCGTACAGAGTGGTGGTGATGTATCGACGACATCATCAGTGGGACAAACTTGGTGCGTGGCCAATGGGAATGCGGGAGCTGAGAAACTC CAAGCTGGGCTCGATTATGCTTGTGGTGAGGGAGGGGCTGATTGCCGTCCGATTCAGACCGGTTCCACGTGCTACAATCCAAACACGGTGGAGGCGCACG CATCGTATGCCTTCAACAGTTATTATCAAAAGAAAGCTCGTGGTGCCGGCACTTGTGATTTTGGTGGCGCGGCTTATGTTGTTACGCAACAACCTAGATT TGGAAATTGCAAGTTCCCCACTGGATACTGA
AA sequence Show only first row Show all	>Potri.011G094400.2 pacid=42780555 polypeptide=Potri.011G094400.2.p locus=Potri.011G094400 ID=Potri.011G094400.2.v4.1 annot-version=v4.1 MTSLSTFTFSFLLLSFSPSFSFFYAFAAGTIGVNYGRVANNLPAPAEVVSLLKSHGINRIKLYDTDSDVLTALAGSSINVVVALPNELLSSVAADQSFAD SWVKGNISQHFPQTKIEAIAVGNEVFVDPKNTTPFLVPAMKNVHNSLVKFNLSSIKISSPIALSALQSSYPSSAGSFKTELIGPVIKPMLDFLRQTGSYL MINAYPFFAYAANADVISLDYALLKENQGVVDSGNGLKYNSLLEAQLDAVHAAMSAIQYNDVKMVVTETGWPSLGDEDEIGAGEANAASYNGNLVKRVLT GNGTPLRPQEPLNVYLFALFNENEKPGPTSERNYGLFYPNEKRVYDVPFTLEQLGNGQSMPVNKSNSPAPSVQSGGDVSTTSSVGQTWCVANGNAGAEKL QAGLDYACGEGGADCRPIQTGSTCYNPNTVEAHASYAFNSYYQKKARGAGTCDFGGAAYVVTQQPRFGNCKFPTGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55180			O-Glycosyl hydrolases family 1...		Potri.011G094400 [exp]	0	1
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Potri.014G071700 [exp]	2.23	0.9423	Pt-FLA8.1
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Potri.001G263700 [exp]	2.82	0.9397
					Potri.008G195700 [exp]	3.00	0.9336
AT1G01690		ATPRD3	ARABIDOPSIS THALIANA PUTATIVE ...		Potri.002G160100 [exp]	3.74	0.9313
					Potri.006G055800 [exp]	3.87	0.9406
AT3G12110		ACT11	actin-11 (.1)		Potri.010G204300 [exp]	5.65	0.9412	ACT5,Pt-PEAC14.3
AT5G51840			unknown protein		Potri.012G132766 [exp]	5.65	0.9226
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Potri.010G216800 [exp]	5.65	0.9338
AT3G18170			Glycosyltransferase family 61 ...		Potri.012G051500 [exp]	7.07	0.9157
AT5G43420			RING/U-box superfamily protein...		Potri.010G072700 [exp]	7.93	0.9281

Compare expression of checked genes

Potri.011G094400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.