Plant FIBer expression Database

Potri.011G095000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G21740 53 / 3e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G371800
[exp]
145 / 6e-45 AT4G21740 93 / 1e-24 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.011G095000.1 pacid=42781436 polypeptide=Potri.011G095000.1.p locus=Potri.011G095000 ID=Potri.011G095000.1.v4.1 annot-version=v4.1
ATGGCTTTTTCAAAAGAAATCACCAAAGTAACGGCTATCTACATGCAGCTGTCGATCATCATGACGATCACCATCATACAGCACTCGAAAGCCAGGGAAT
TACGACCATCAGATCACGGGCTGGATCACCAGAGCCTGCCACCAACAGGGGCGAAATTCCCACCTGACATGAAAGAATTCTTTGGAGCATCTAATCCAGC
GACGAGAAATACGATGTCGCCGTCAACTGGTGTTGCATTGCCCAAAGTAAAGAACTCAAGCGACACGTCGTGGTGGAGAACCGTTGGTGGTGGTGGTGGT
GGTGGTAAAGGCGGTGGTGATGATCATGTGAGGCACCTGCTGTTGGTGGCAAGTTTGGTGTGTGGGGTCACGGGTTTGGGTTTGTTAGTTTCTTCTGCTG
TCATTTGCTACTGCTTTATTAGGCATAAAAACAAACATTCATCATCAGCAGCAACAGATAATACTAACAATAGGAGTATTCCTGTATAA
AA sequence
>Potri.011G095000.1 pacid=42781436 polypeptide=Potri.011G095000.1.p locus=Potri.011G095000 ID=Potri.011G095000.1.v4.1 annot-version=v4.1
MAFSKEITKVTAIYMQLSIIMTITIIQHSKARELRPSDHGLDHQSLPPTGAKFPPDMKEFFGASNPATRNTMSPSTGVALPKVKNSSDTSWWRTVGGGGG
GGKGGGDDHVRHLLLVASLVCGVTGLGLLVSSAVICYCFIRHKNKHSSSAATDNTNNRSIPV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G21740 unknown protein Potri.011G095000
[exp]
0 1
AT1G09000 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NP... Potri.013G022700
[exp]
4.24 0.8145 Pt-ANP1.1
AT1G17890 GER2 NAD(P)-binding Rossmann-fold s... Potri.006G179100
[exp]
6.08 0.7896
AT1G06320 unknown protein Potri.005G202500
[exp]
7.21 0.8017
AT3G63430 unknown protein Potri.002G046700
[exp]
31.46 0.7516
AT2G30890 Cytochrome b561/ferric reducta... Potri.005G204300
[exp]
51.08 0.8060
AT1G69080 Adenine nucleotide alpha hydro... Potri.008G109000
[exp]
65.38 0.7938
AT5G15230 GASA4 GAST1 protein homolog 4 (.1.2) Potri.017G083000
[exp]
90.43 0.7927 GASA4.2
AT3G24040 Core-2/I-branching beta-1,6-N-... Potri.001G053800
[exp]
98.26 0.7904
AT2G15240 UNC-50 family protein (.1) Potri.001G300100
[exp]
121.38 0.7407
AT1G43580 Sphingomyelin synthetase famil... Potri.005G193300
[exp]
150.64 0.7734

Potri.011G095000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.