Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-UBP15.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17110 800 / 0 UBP15 ubiquitin-specific protease 15 (.1.2) AT2G24640 393 / 6e-126 UBP19 ubiquitin-specific protease 19 (.1.2) AT4G31670 389 / 8e-125 UBP18 ubiquitin-specific protease 18 (.1) AT5G65450 367 / 3e-115 UBP17 ubiquitin-specific protease 17 (.1) AT4G24560 354 / 1e-107 UBP16 ubiquitin-specific protease 16 (.1) AT3G14400 215 / 1e-59 UBP25 ubiquitin-specific protease 25 (.1) AT5G57990 216 / 5e-59 UBP23 ubiquitin-specific protease 23 (.1) AT5G46740 153 / 2e-38 UBP21 ubiquitin-specific protease 21 (.1) AT4G17895 149 / 4e-37 UBP20 ubiquitin-specific protease 20 (.1) AT2G22310 123 / 4e-30 ATUBP4 ubiquitin-specific protease 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G378900 [exp] 1395 / 0 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.018G009500 [exp] 404 / 1e-129 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.006G270600 [exp] 399 / 7e-129 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.005G156900 [exp] 402 / 1e-124 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.002G104800 [exp] 400 / 6e-124 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1) Potri.001G394600 [exp] 224 / 5e-63 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1) Potri.011G112800 [exp] 222 / 2e-62 AT3G14400 690 / 0.0 ubiquitin-specific protease 25 (.1) Potri.018G107500 [exp] 220 / 5e-60 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.006G185200 [exp] 216 / 8e-59 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009273 [exp] 404 / 4e-126 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10020116 [exp] 390 / 7e-125 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10026918 [exp] 387 / 1e-123 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10015893 [exp] 227 / 9e-67 AT4G24560 306 / 2e-95 ubiquitin-specific protease 16 (.1) Lus10005591 [exp] 214 / 2e-59 AT3G14400 639 / 0.0 ubiquitin-specific protease 25 (.1) Lus10013726 [exp] 213 / 4e-59 AT3G14400 641 / 0.0 ubiquitin-specific protease 25 (.1) Lus10035825 [exp] 214 / 6e-58 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10036607 [exp] 213 / 1e-57 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10043127 [exp] 186 / 1e-49 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1) Lus10032623 [exp] 190 / 2e-49 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [poplar] [flax] TRASH PF01753 [poplar] [flax] zf-MYND MYND finger CL0125 [poplar] [flax] Peptidase_CA PF13423 [poplar] [flax] UCH_1 Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Potri.011G095200.4 pacid=42781750 polypeptide=Potri.011G095200.4.p locus=Potri.011G095200 ID=Potri.011G095200.4.v4.1 annot-version=v4.1 ATGCTTGAACCAAGGGGAGCTGATATACCTGTCCTGTTTCTTGTCTTGGTCGTGCTTCCTCTGGTTGCTTACATTTTGCTTGGGAAATGGAGTGAGTCTG CAAAGAAGAGAGAGAGGATAAGTTTGCTTGCTCAACTGGCTGCTGAAGAAGCTTTTAGAGCAGAAGTAATGGCTACTGCTTGTATCATTCCTCCTATGTC TACTTCAAAGAATGGAATTCATGTTTGTGCTAGATGCTTTAGTCCAGCTACAACCCGCTGCTCCAGATGCAAGTCTGTTAGATATTGTTCTGGAAAGTGT CAAATAATTCATTGGAGACAAGCCCACAAGGAAGAGTGCCAACGGTTGGAAACTACAAGTTCATGCTCATCTCCTATGGCTACCTCATGTGATGAATCCA TCCCTGAGAAGTTATCAATCAATGATGGCTTGGACTTATTTTCCTTGGGGTATAATAGCAAGCAGCCTGCAATGGATACTGGTCTTTCAGATAATAATGT CCATCCTTTAACAAGCACTGGTGCTTGTGCTGCTGGTAATTGTCCTGCAACTGTTACCTCTCAAGAAGCTATGCTACACAGAAGAAGTCCAGACAAGCAA GTTTCATGCAAATCAAACAAAGAAATGTACTGTGGGTCCTCAAGCTCATTGAATGCAGGAAAATATGGGATAAATGCACGTGAAATTGGAACAAACTTTG TTTTTAATGTAGTAGATTTCTCTAATGCGGAAGCATCTGTTGATGGTGAAATGGCAGGACCAAAATGTTCTTATGAAACACCAGTTACAAATGGAAATGT GAAAGCTAATACTGCATTGCATCCCATGGGAAACAAATCTTTGAAATCATCAAAATCAAAGATGAAATTCTCTGGAGACCAATCCTATTTTAAAATAGAT GGAAAAGGACAACTTACAGATGATTCAAAAGTTGCAAGAATGCGCAATGCAAACCCTGCAGCAGGAACCAATGGGGTTACAAGCATTGGTATTATGAAGA TGATGGATTTAAGGAAGTCGTCAAAACTTGCTACTCAAGATATAACAGAGGTTAATGCTACTCACAAAAAATTAAGGATGCTGTTCCCTTATGAAGAATT TGTGAACATCTTCAATTGTGAAGTTATCGACTTAACACCTAGAGGACTTGTAAATTGTGGAAACAGTTGCTATGCCAATGCTGTCCTCCAATGTTTAACC TGCACAAAACCTCTGATCGTCTTCTTGCTTCATAGATCACATTCAAGAGCCTGTTGTGAGATAGATTGGTGTCTCATGTGTGAACTTGAGCAGCATGTAA TGATGTTAAGAGAATGTGGGGGCCCTCTGTCTCCCAGTAGAATCCTACTGCATATGCGAAACATTAATCATCAGATTGGCGATGGAAGTCAAGAAGATGC ACATGAGTTCTTAAGGCTTCTGATTGCATCAATGCAATCCATATGCTTGGAGAAACTGGGTGGTGAAGACAAGGTTGATCCCAGATTGCAGGAAACAACT TTCATACAGCATACTTTTGGTGGGCGTCTTAGGTCGAAGGTCAAATGCCTGAGATGTCATCATGAGTCAGAAAGATATGAGAATATTATGGATCTTACAC TAGAGATATTTGGTTGGGTTAAGTCACTTGAAGATGCATTGACTCAGTTTACAACCCCTGAAGAACTAGATGGAGAAAACATGTATAGATGTGGAAGGTG TGCTGCATATGTCCGAGCTAGGAAGCAGTTGAGCATACATGAGGCACCAAACATCCTGACAATTGTTTTGAAGAGATTCCAGGAGGGAAAATATGGGAAA ATAAACAAATGCATCACTTTTCCTGACATGCTGGATATGATCCCATTTATGACTGGAACTGGTGATGTCCCTCCTCTTTACATGCTTTATGCTGTTGTGG TGCATTTGGATACACTGAATGCCTCTTTTTCTGGACATTACGTGGCATATGTAAAAGATTTGCAAGGGAGCTGGTTCAGGATAGATGACACTGAGGTTCA TCCAGTATCGATGAGCCAGGTGATGTTGGAAGGAGCATACATTTTGTTTTACACGAGGTCCTGTCCTCGCCCTCAAAAGGCAATTTGCGAGAAAGCCAGC AGGCAACAAGTTCCATTAACTTTGAGACACTGCATGTCAAGAACTCAGAAACCTTCAAGACAAGGACAGAGCAAATGCAGCAGCCACTTTGTTGGCCCAG AAGCTTCATTGGATGTCAAACCAGAAAACGGTTCTAGCCTTGCCAGCTATGCTAATGGCATTCCAAGGAGCAGTGCAAACAAAAATACCACTCAGGTGAT GGATTTCTCTGATGCTACATCAAGTGATCGGTCCCTTTTTACAAGCTCTGACGAGGCTTCTTTCACAACCGAGAGCACCAGAGACTCTTTCAGTACTATA GATTATGCTGATGCATGCAATGCAGATGCTTTCTCATCGATTTTCAATGATTTGTATGCTCCCGAATCCTCTTATCAGAATTCTCTTTGCCGTTGA
AA sequence Show only first row Show all	>Potri.011G095200.4 pacid=42781750 polypeptide=Potri.011G095200.4.p locus=Potri.011G095200 ID=Potri.011G095200.4.v4.1 annot-version=v4.1 MLEPRGADIPVLFLVLVVLPLVAYILLGKWSESAKKRERISLLAQLAAEEAFRAEVMATACIIPPMSTSKNGIHVCARCFSPATTRCSRCKSVRYCSGKC QIIHWRQAHKEECQRLETTSSCSSPMATSCDESIPEKLSINDGLDLFSLGYNSKQPAMDTGLSDNNVHPLTSTGACAAGNCPATVTSQEAMLHRRSPDKQ VSCKSNKEMYCGSSSSLNAGKYGINAREIGTNFVFNVVDFSNAEASVDGEMAGPKCSYETPVTNGNVKANTALHPMGNKSLKSSKSKMKFSGDQSYFKID GKGQLTDDSKVARMRNANPAAGTNGVTSIGIMKMMDLRKSSKLATQDITEVNATHKKLRMLFPYEEFVNIFNCEVIDLTPRGLVNCGNSCYANAVLQCLT CTKPLIVFLLHRSHSRACCEIDWCLMCELEQHVMMLRECGGPLSPSRILLHMRNINHQIGDGSQEDAHEFLRLLIASMQSICLEKLGGEDKVDPRLQETT FIQHTFGGRLRSKVKCLRCHHESERYENIMDLTLEIFGWVKSLEDALTQFTTPEELDGENMYRCGRCAAYVRARKQLSIHEAPNILTIVLKRFQEGKYGK INKCITFPDMLDMIPFMTGTGDVPPLYMLYAVVVHLDTLNASFSGHYVAYVKDLQGSWFRIDDTEVHPVSMSQVMLEGAYILFYTRSCPRPQKAICEKAS RQQVPLTLRHCMSRTQKPSRQGQSKCSSHFVGPEASLDVKPENGSSLASYANGIPRSSANKNTTQVMDFSDATSSDRSLFTSSDEASFTTESTRDSFSTI DYADACNADAFSSIFNDLYAPESSYQNSLCR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17110		UBP15	ubiquitin-specific protease 15...		Potri.011G095200 [exp]	0	1	Pt-UBP15.2
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.016G075700 [exp]	3.46	0.8384	Pt-SPY.1
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Potri.006G078000 [exp]	6.16	0.8098	HEN2.1
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Potri.006G065000 [exp]	10.39	0.7745	Pt-ATMAK10.3
AT1G29820			Magnesium transporter CorA-lik...		Potri.001G353000 [exp]	10.39	0.7945
AT4G03250	HD		Homeodomain-like superfamily p...		Potri.009G071700 [exp]	14.49	0.7741
AT3G61960			Protein kinase superfamily pro...		Potri.014G107000 [exp]	18.41	0.6993
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.003G163600 [exp]	18.65	0.7619
AT5G38460			ALG6, ALG8 glycosyltransferase...		Potri.017G114100 [exp]	20.34	0.7559
AT3G10140		RECA3	RECA homolog 3 (.1)		Potri.006G048000 [exp]	23.36	0.7131
AT3G19190		ATATG2	autophagy 2 (.1)		Potri.009G102900 [exp]	24.08	0.7799

Compare expression of checked genes

Potri.011G095200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.