Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GA2ox6,GA2.8
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78440 404 / 3e-141 ATGA2OX1 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) AT1G30040 388 / 8e-135 ATGA2OX2 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) AT2G34555 348 / 4e-119 ATGA2OX3 gibberellin 2-oxidase 3 (.1) AT1G02400 299 / 4e-100 ATGA2OX4, ATGA2OX6, DTA1 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) AT1G47990 291 / 7e-97 ATGA2OX4 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) AT3G13610 172 / 4e-50 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G15550 167 / 3e-48 ATGA3OX1, GA4 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) AT1G78550 162 / 2e-46 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G08640 160 / 6e-46 ATFLS1, FLS flavonol synthase 1 (.1.2) AT5G51810 160 / 8e-46 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G378400 [exp] 626 / 0 AT1G78440 404 / 1e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.004G065000 [exp] 476 / 1e-169 AT1G30040 448 / 6e-159 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Potri.014G117300 [exp] 347 / 8e-119 AT1G02400 367 / 2e-127 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Potri.002G191900 [exp] 339 / 1e-115 AT1G02400 394 / 7e-138 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Potri.008G101600 [exp] 338 / 2e-115 AT1G47990 350 / 2e-120 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) Potri.010G149700 [exp] 335 / 5e-114 AT1G47990 318 / 4e-108 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) Potri.015G002800 [exp] 166 / 3e-48 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 159 / 2e-45 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 158 / 4e-45 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023311 [exp] 391 / 2e-136 AT1G30040 381 / 6e-133 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Lus10025016 [exp] 333 / 2e-113 AT1G02400 367 / 4e-127 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10009998 [exp] 321 / 2e-108 AT1G02400 362 / 3e-125 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10004511 [exp] 315 / 3e-106 AT1G02400 347 / 3e-119 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10037816 [exp] 270 / 5e-89 AT1G02400 298 / 4e-101 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10017094 [exp] 267 / 1e-87 AT1G02400 305 / 4e-103 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10038498 [exp] 249 / 2e-82 AT1G78440 258 / 2e-86 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Lus10011476 [exp] 171 / 2e-49 AT1G15550 412 / 1e-143 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10021002 [exp] 160 / 1e-45 AT3G19000 389 / 3e-135 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10030995 [exp] 155 / 9e-44 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.011G095600.1 pacid=42782043 polypeptide=Potri.011G095600.1.p locus=Potri.011G095600 ID=Potri.011G095600.1.v4.1 annot-version=v4.1 ATGGTTGTGTGTGTGTTTGTGTATATTATAAGTAGCATTTTTGTATATCAACTCAGCCGAGCTCTCTCTATCTCTCTGTCTTCTTTCCTCCTGCAGACAA CAACAACCATGGTGCTCGTGCCCAAGCCAGCACTTCAACAGTTCTCGTTTATAAGAAACATCAAACCCACCACATTCTTTTCTGGAATCCCTCTAATAGA CCTCTCAAAACCCGACTCCAAGCACCTCCTGGTCAAGGCATGTGAGGAATTTGGATTTTTCAAGGTAGTCAACCATGGCGTGCCTTTGGAATTCATTTCG AAGCTGGAATCGGAAGCTGTCAAGTTCTTCTCATTACCGCTTTCTGAGAAAGAAAAAGCAAGCCCTCCTAATCCCTTTGGCTATGGTAAGAAAAGCATTG GACAAAACGGTGATGTGGGTTGGGTAGAATACCTTCTCCTGACCACTAATCAAGAATCAGTTTCTCAGAGACTCTCTTCAGTTTTTGGTGACAACCCAGA AAAGTTTCGGTGTGCTTTGAATGATTATGTATCAGCTGTGAAGAAAATGGCATGTGAGATTCTTGAAATGATGGCTGATGGTCTAAAGATTCAGAATAGA AATGTGTTTAGTAAACTTTTGATGGATGAACAGAGTGACTCTGTTTTTAGGCTAAATCACTACCCTCCATGCCCAGAGATTCAAGCATTGAAAGACCACA ACATGATTGGATTTGGAGAGCACACAGACCCACAGATCATTTCTGTGTTAAGATCCAACAACACTTCTGGCCTGCAAATCTCTCTTAATGATGGAAGCTG GATTTCAGTCCCACCTGACCCGAGCTCATTTTTCATCAATGTTGGCGACTCATTACAGGTTATGACTAATGGGCGGTTTAAAAGTGTAAGGCACAGAGTC TTGGCCAACAGTATAAAGGCTAGAATTTCAATGATTTATTTTGGTGGACCACCTTTGAGAGAGAAAATAGCTCCATTGCCCTCGCTCATGGAAGGAGAAG AAAGCTTGTACAGAGAATTTACATGGTTCGAGTACAAGAGATCTGCTTACAACTCAAGATTGGCCGATAATAAGCTTGTCCTCTTCGAGAGGATAACAGC CTCGTAA
AA sequence Show only first row Show all	>Potri.011G095600.1 pacid=42782043 polypeptide=Potri.011G095600.1.p locus=Potri.011G095600 ID=Potri.011G095600.1.v4.1 annot-version=v4.1 MVVCVFVYIISSIFVYQLSRALSISLSSFLLQTTTTMVLVPKPALQQFSFIRNIKPTTFFSGIPLIDLSKPDSKHLLVKACEEFGFFKVVNHGVPLEFIS KLESEAVKFFSLPLSEKEKASPPNPFGYGKKSIGQNGDVGWVEYLLLTTNQESVSQRLSSVFGDNPEKFRCALNDYVSAVKKMACEILEMMADGLKIQNR NVFSKLLMDEQSDSVFRLNHYPPCPEIQALKDHNMIGFGEHTDPQIISVLRSNNTSGLQISLNDGSWISVPPDPSSFFINVGDSLQVMTNGRFKSVRHRV LANSIKARISMIYFGGPPLREKIAPLPSLMEGEESLYREFTWFEYKRSAYNSRLADNKLVLFERITAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78440		ATGA2OX1	Arabidopsis thaliana gibberell...		Potri.011G095600 [exp]	0	1	GA2ox6,GA2.8
AT4G27290			S-locus lectin protein kinase ...		Potri.011G126151 [exp]	2.00	0.8221
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Potri.009G031900 [exp]	4.47	0.7904
AT2G41380			S-adenosyl-L-methionine-depend...		Potri.016G039051 [exp]	4.47	0.8175
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Potri.006G219500 [exp]	4.58	0.7039	Pt-GPA1.2
AT5G16450			Ribonuclease E inhibitor RraA/...		Potri.013G085700 [exp]	6.16	0.6647
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.013G060000 [exp]	11.83	0.7538
					Potri.007G093850 [exp]	12.48	0.7539
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Potri.010G184400 [exp]	16.97	0.7086
AT2G29590			Thioesterase superfamily prote...		Potri.009G042100 [exp]	17.23	0.7212
AT5G26594		ARR24	response regulator 24 (.1)		Potri.002G253000 [exp]	20.78	0.7421

Compare expression of checked genes

Potri.011G095600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.