Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06350 753 / 0 ARM repeat superfamily protein (.1) AT5G27010 676 / 0 ARM repeat superfamily protein (.1) AT4G04680 172 / 2e-48 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G208900 [exp] 1589 / 0 AT5G06350 756 / 0.0 ARM repeat superfamily protein (.1) Potri.011G096201 [exp] 155 / 2e-44 AT5G06350 51 / 1e-08 ARM repeat superfamily protein (.1) Potri.006G203601 [exp] 85 / 3e-19 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029399 [exp] 803 / 0 AT5G06350 675 / 0.0 ARM repeat superfamily protein (.1) Lus10004194 [exp] 501 / 6e-163 AT5G06350 432 / 3e-136 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12333 [poplar] [flax] Ipi1_N Rix1 complex component involved in 60S ribosome maturation
Representative CDS sequence Show only first row Show all	>Potri.011G095700.6 pacid=42782229 polypeptide=Potri.011G095700.6.p locus=Potri.011G095700 ID=Potri.011G095700.6.v4.1 annot-version=v4.1 ATGGCAAAAACTAAGGGTTCTTCCAAGAAGCAGCAAAAGCGTGGAATTGACTTCAAAAAAATAAAGCGAAAGATCGGCAGGAAATTGCCACCTCCTAAGA ATACTACTAACACAGAAATTAAATCCAAAGCAATTGTTCTTCCGGAGCAGAGTGTGGCATCAGAGAAAGCAGGTTTAGCTGTGAGCAAGAAAGGCTTGAC TTTGAAAGAGCTTCTTCAACATACATCCCATCACAATGCGAAAGTCCGTAAAGATGCCTTGATGGGCATGAAGGATTTATTCCTCAATCATCCAGAAGAG CTTAAATTGCATAGATATGCTGTTATAGAAAAATTACGTGAACGGATCAGTGATGATGGGAAAATTGTTCGAGAAAACCTATATCAACTTCTTAAGTCAG TTATTTTACCAGGCTGCAAAGAGGATAATCAGGGACCTGTCATTTCGTTAATGATGGCTTACATCTTTAATGCAATGACACATTTAGCAATTGACATTCG ACTTATGGCATTCAAATTTTTTGATCTCGCTGTTGAATATCATCCTCCATCATTTTTCTCGTATGCTGAAAAGATACTTCAAAATTATGAAGATATTCTT CGGAAGAACCAGTTCTATTTAGAAGACAAAGTCAAGCTGAAGAATGCTCTTGCTGGTTTGGTGCGATGCTTGTTGCTGTTGCCATCTAGTAAAGAAGTTA ACCTGCCTGCGAAGAATATCCCTGAGAAAAAAATATTGCAGGCTTTTGAGCCTGATGTGCCTACAGTATTTGCAGAATATTCCGTCATCATCAAGAAGCT GAAAGACCTTGTACCAGTTTTAGTCAATTGCTTCCAAGATTTTCTCCCTGTACTTCACGACTCACTAGATGCACAATCATTTGATTGCATGCTTAACATA CTTCGGAGCATAGATCTTGCAGTCGCATTCTTTATCCATGGGATTCAGCAAGGTCATCCCGAATCACCACCTCTTGATCAAAGCTTCTCATCAGTACTGT TGAAGAAGTTACTAGTTGTGTTTCCCCTCAGTCCAATGCATCACCTTTCAGAAAAGGATGATGACAGATATGTTATCTTCAACATTGTAATTACAGAAAT ATTTATGCACTTAAGTGAATGGATCTGCCCACCTGCTGTCTTATTTGAGAAATTTCTAACATTTGTGGAGTACGTGTTGCTTGAAAAGAGCTGCAGTAAC GTGCGATCTAACAAAGCAGTTCGAGAAAAGCAGATATCTACACTGATTCCTTTTATCCCAAAACTTGTGTCACGGGTGATTGGAAATTGGAAGAATCGCC TTCTCCAGGCATTTACAAAGACATTCCAGGATTGCAGTCCAGAGTCTTCAGTAAAATTAGCTTGCCTTGCTGCAATTGAAGAAATGATCATTTCTCATGA AGATCTGCTGTGCACAGATGTCAATGATTCAGGACTATTTGACTACAAGATTACTTGGATAAGAGAGCTGCCTATGTTGCTCATTCTGCTAGGCGACCGG CACTCATCCTCTTCCAAGGTTGTGTTGCATCTTCTACTTCGCCTGGGGCAACGTTCATTGTTGTATGATGATATGCAAGGCTTGCTGAAAGAGTTCTACA GCACAGATCAAGACAAAGGGAACATATGTTATGGTCCTTTTTTAAGGCTAGCCAGGGATTCACAAGAACTCTCTATCTGCTGTCTTTATTATTTTTCTCA ACTGGATTCAACTTTGCTGAAGTCAATTGCTTCTTGCTGCGTGTGTCATGAGTTGGATCCATTTATGTTATTCCGGATCATAGAGGTTTTACATTCAACC TACAAAGCTGGCCATATTCAGATTTCTGACTTCATCAGCTTCTTAATCACGCTGGCTTCGCGTTTCAAAGTTTTTCCTGAAAATATTTTTCCTGCCACGG AGAGAGATATGAAGACCTCAAATCGTGCAACTTTTAAATCATTGATCAGTGTTGTTTGCTCATGCCTGTCGCAGATGGGTGACAATTCTCTAGTTTTTGC GATTCTAGAGAAAGTAATACTAGAGCAGCTATCATTAAAACCACCTCTGGACAATTCTTGTGCTATGCTCAGAATGCTTATTGCACTGGATTCTAAGCCC ACAAGACTTTCTGAACAAAGTATTTGCTCTTTAAGCAATGTCCTCTCAGCATATCTCATTGATGTTGCACATTGTGTTCCAGAAGATGATGATGAGAGCA TGAGCTCCATCCATGGACAAACACGTCGTTATTATCTTCTGCCTAGCTTTATCCTGTTTGATAGAAGTCACAAACTTCTCAATCTTGTGTTGAACGTGAT GGGGTCATTGATTAATGGAAGAAGTTTCTCACTTCTATCTGGTGATCGTATCTGTTATGCCAAGGGGATCTCAAGTATTATAAATGCTATTGTTTCTGTT TTACTATGGATGCAAAGGGAAGCTAAGGTTCAGCAAATTCTTTATTTATACAAGGAAGAGATTGACCACATTTCACGAAGCATATGCTCTTTACAGTCTT TAGAGGAAATCAACGTGCCAATAGAAGAAAGACACATAATAAAGCGTGCAATTGATCGATTAAAGACTCTAACAAGTTCATTATATCAGTAG
AA sequence Show only first row Show all	>Potri.011G095700.6 pacid=42782229 polypeptide=Potri.011G095700.6.p locus=Potri.011G095700 ID=Potri.011G095700.6.v4.1 annot-version=v4.1 MAKTKGSSKKQQKRGIDFKKIKRKIGRKLPPPKNTTNTEIKSKAIVLPEQSVASEKAGLAVSKKGLTLKELLQHTSHHNAKVRKDALMGMKDLFLNHPEE LKLHRYAVIEKLRERISDDGKIVRENLYQLLKSVILPGCKEDNQGPVISLMMAYIFNAMTHLAIDIRLMAFKFFDLAVEYHPPSFFSYAEKILQNYEDIL RKNQFYLEDKVKLKNALAGLVRCLLLLPSSKEVNLPAKNIPEKKILQAFEPDVPTVFAEYSVIIKKLKDLVPVLVNCFQDFLPVLHDSLDAQSFDCMLNI LRSIDLAVAFFIHGIQQGHPESPPLDQSFSSVLLKKLLVVFPLSPMHHLSEKDDDRYVIFNIVITEIFMHLSEWICPPAVLFEKFLTFVEYVLLEKSCSN VRSNKAVREKQISTLIPFIPKLVSRVIGNWKNRLLQAFTKTFQDCSPESSVKLACLAAIEEMIISHEDLLCTDVNDSGLFDYKITWIRELPMLLILLGDR HSSSSKVVLHLLLRLGQRSLLYDDMQGLLKEFYSTDQDKGNICYGPFLRLARDSQELSICCLYYFSQLDSTLLKSIASCCVCHELDPFMLFRIIEVLHST YKAGHIQISDFISFLITLASRFKVFPENIFPATERDMKTSNRATFKSLISVVCSCLSQMGDNSLVFAILEKVILEQLSLKPPLDNSCAMLRMLIALDSKP TRLSEQSICSLSNVLSAYLIDVAHCVPEDDDESMSSIHGQTRRYYLLPSFILFDRSHKLLNLVLNVMGSLINGRSFSLLSGDRICYAKGISSIINAIVSV LLWMQREAKVQQILYLYKEEIDHISRSICSLQSLEEINVPIEERHIIKRAIDRLKTLTSSLYQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06350			ARM repeat superfamily protein...		Potri.011G095700 [exp]	0	1
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Potri.001G350400 [exp]	2.00	0.9282
AT2G16880			Pentatricopeptide repeat (PPR)...		Potri.008G044000 [exp]	3.00	0.9245
AT5G15700			DNA/RNA polymerases superfamil...		Potri.004G111600 [exp]	3.00	0.9093
AT1G05910			cell division cycle protein 48...		Potri.017G030900 [exp]	4.35	0.8937	BRD911
AT2G03360			Glycosyltransferase family 61 ...		Potri.010G162200 [exp]	4.47	0.9089
					Potri.011G005050 [exp]	4.89	0.9110
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Potri.011G001100 [exp]	5.29	0.9037
AT1G03220			Eukaryotic aspartyl protease f...		Potri.006G068900 [exp]	6.92	0.9230
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Potri.010G233500 [exp]	8.48	0.8891
AT2G26100			Galactosyltransferase family p...		Potri.018G053150 [exp]	8.48	0.9061

Compare expression of checked genes

Potri.011G095700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.