Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14450 392 / 2e-137 CID9 CTC-interacting domain 9 (.1) AT1G53650 381 / 1e-133 CID8 CTC-interacting domain 8 (.1.2) AT1G32790 344 / 4e-118 CID11 CTC-interacting domain 11 (.1.2) AT4G10610 339 / 2e-116 ATRBP37, RBP37, CID12 RNA-BINDING PROTEIN 37, CTC-interacting domain 12 (.1.2) AT3G49390 334 / 2e-114 CID10 CTC-interacting domain 10 (.1.2) AT5G24440 291 / 9e-98 CID13 CTC-interacting domain 13 (.1) AT1G45100 60 / 6e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G49760 58 / 4e-09 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT4G34110 57 / 6e-09 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT3G18610 57 / 9e-09 ATNUC-L2, PARLL1, ATRANGAP1 PARALLEL1-LIKE 1, nucleolin like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G377500 [exp] 496 / 4e-179 AT3G14450 424 / 2e-150 CTC-interacting domain 9 (.1) Potri.015G005400 [exp] 339 / 5e-116 AT1G32790 415 / 5e-145 CTC-interacting domain 11 (.1.2) Potri.012G022000 [exp] 328 / 1e-111 AT1G32790 428 / 4e-150 CTC-interacting domain 11 (.1.2) Potri.011G152700 [exp] 322 / 3e-109 AT4G10610 401 / 5e-140 RNA-BINDING PROTEIN 37, CTC-interacting domain 12 (.1.2) Potri.001G448800 [exp] 275 / 3e-91 AT1G32790 363 / 2e-125 CTC-interacting domain 11 (.1.2) Potri.010G209701 [exp] 67 / 4e-12 AT3G55340 265 / 2e-82 phragmoplastin interacting protein 1 (.1) Potri.009G099300 [exp] 64 / 5e-11 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.001G304000 [exp] 64 / 5e-11 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.002G124200 [exp] 61 / 5e-10 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008851 [exp] 357 / 9e-123 AT3G49390 427 / 7e-150 CTC-interacting domain 10 (.1.2) Lus10033242 [exp] 348 / 5e-120 AT1G32790 436 / 1e-153 CTC-interacting domain 11 (.1.2) Lus10008275 [exp] 351 / 8e-120 AT1G32790 437 / 8e-153 CTC-interacting domain 11 (.1.2) Lus10032942 [exp] 348 / 3e-119 AT3G49390 421 / 2e-147 CTC-interacting domain 10 (.1.2) Lus10032941 [exp] 334 / 2e-114 AT1G32790 383 / 4e-133 CTC-interacting domain 11 (.1.2) Lus10002835 [exp] 67 / 3e-12 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 67 / 3e-12 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010042 [exp] 61 / 3e-10 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010370 [exp] 61 / 4e-10 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10030327 [exp] 56 / 1e-08 AT3G55340 275 / 9e-85 phragmoplastin interacting protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [poplar] [flax] PF07145 [poplar] [flax] PAM2 Ataxin-2 C-terminal region
Representative CDS sequence Show only first row Show all	>Potri.011G095800.1 pacid=42780636 polypeptide=Potri.011G095800.1.p locus=Potri.011G095800 ID=Potri.011G095800.1.v4.1 annot-version=v4.1 ATGGCTGCGGTTGTTGAGATTGCCAGTGAGGCTGCAGTGGCTGCCAAAAGCAACAGCAACACCACAACCAACAAAAATGATAACAACAATAATTTGGATT CAGAAAGAAACCCAAAATCAGAATCTGAATTCACTGTTCAAAAGCTTGTGGATATGTTCACCAAGTTGAATCCTTTGGCTAAGGAGTTTTTCCCATCATC TTACAATAAAAACAATCCAAAACAATTTCATATCAACAATTTTCCAGTGCCTAACAAGCAATCAGCCAATGACAACTTCCCTAAAAGGCGAAGAAATGAC TTTAACCAGGGGAGGAGAAGGTTGAATGGGAGAGCTTATAGAGCCCAACGAGAAGACAGTATTAGACGAACAGTATATGTTTCTGATATTGATCAACATG TAACCGAAGAGCAGCTTGCTGGCTTATTTAGTGGTTGTGGACAAGTTGTTGATTGCCGGATTTGTGGTGATCCGCGTTCAGTTCTTCGTTTTGCCTTTGT GGAATTTGCTGTTGAGCAAGGGGCAAGAGCAGCTTTAAACCTTGGCGGGACCATGCTAGGATACTATCCAGTCAGAGTGCTACCTTCAAAAACTGCTATC CTTCCAGTGAATCCTACATTTCTCCCTCAGTCTGAAGATGAACGGGAGATGTGCACTAGGACAGTCTATTGTACAAATATCGAAAAAAAGGTTTCTCAAG CTGAGGTCAAGAATTTTTTCGAATCAATATGTGGTGAGGTCACTCGCTTGAGGCTTTTAGGGGATCATGTGCATTCAACTCGTATAGCTTTTGTTGAATT TGCTATGGCAGAAAGTGCCATAGTTGCGCTGAATTGCAGTGGGATGGTCCTGGGATCCCAGCCTGTCAGGGTAAGTCCTTCAAAGACACCAGTGAGGCCA CGAGTTACTCGCCTAGCATTGCATTAA
AA sequence Show only first row Show all	>Potri.011G095800.1 pacid=42780636 polypeptide=Potri.011G095800.1.p locus=Potri.011G095800 ID=Potri.011G095800.1.v4.1 annot-version=v4.1 MAAVVEIASEAAVAAKSNSNTTTNKNDNNNNLDSERNPKSESEFTVQKLVDMFTKLNPLAKEFFPSSYNKNNPKQFHINNFPVPNKQSANDNFPKRRRND FNQGRRRLNGRAYRAQREDSIRRTVYVSDIDQHVTEEQLAGLFSGCGQVVDCRICGDPRSVLRFAFVEFAVEQGARAALNLGGTMLGYYPVRVLPSKTAI LPVNPTFLPQSEDEREMCTRTVYCTNIEKKVSQAEVKNFFESICGEVTRLRLLGDHVHSTRIAFVEFAMAESAIVALNCSGMVLGSQPVRVSPSKTPVRP RVTRLALH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14450		CID9	CTC-interacting domain 9 (.1)		Potri.011G095800 [exp]	0	1
AT3G60910			S-adenosyl-L-methionine-depend...		Potri.009G055600 [exp]	2.64	0.8255
					Potri.018G110375 [exp]	4.00	0.8255
					Potri.009G083702 [exp]	8.24	0.8084
AT1G67540			unknown protein		Potri.010G057800 [exp]	9.27	0.8428
AT1G10280			Core-2/I-branching beta-1,6-N-...		Potri.004G228100 [exp]	17.60	0.8412
					Potri.003G013856 [exp]	23.23	0.8400
AT3G18270		CYP77A5P	"cytochrome P450, family 77, s...		Potri.015G044400 [exp]	25.45	0.7554
AT1G03150			Acyl-CoA N-acyltransferases (N...		Potri.002G052000 [exp]	28.37	0.8275
AT1G59940		ARR3	response regulator 3 (.1)		Potri.008G193000 [exp]	37.88	0.7010
AT2G02955		MEE12	maternal effect embryo arrest ...		Potri.010G169500 [exp]	38.20	0.8203

Compare expression of checked genes

Potri.011G095800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.