Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78420 376 / 2e-128 RING/U-box superfamily protein (.1.2) AT1G17145 331 / 8e-112 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G378000 [exp] 674 / 0 AT1G78420 387 / 1e-132 RING/U-box superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005577 [exp] 521 / 0 AT1G78420 393 / 6e-135 RING/U-box superfamily protein (.1.2) Lus10013709 [exp] 429 / 3e-150 AT1G78420 381 / 1e-131 RING/U-box superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G096000.1 pacid=42781998 polypeptide=Potri.011G096000.1.p locus=Potri.011G096000 ID=Potri.011G096000.1.v4.1 annot-version=v4.1 ATGGGGAATAAGCTGGGGAGGAGGAGACAAGTGGTGGATGAGATGTATACAAGACCACAAGGTCTATATGCTCATAAAGATGTGGATCATAAAAAGCTAA GAAAGCTCATTCTCGAATCCAAGCTTGCCCCTTGTTTTCCAGGGGACGAGGACAGCTGTTATGATCATGAGGAATGCCCCATCTGTTTCTTGTATTATCC GAGTCTCAACCGATCAAGATGTTGCATGAAGTGCGTCTGTACAGAGTGTTTTCTGCAGATGAAGAATCCTAATTCAACCCGACCTACTCAATGTCCATTT TGCAAAACCGCAAATTATGCTGTGGAGTATCGGGGTGTGAAAACAAAAGAGGAAAAGGGTTTGGAGCAGATTGAAGAACAGCGTGTTATAGAAGCGAAAA TTAGGATGCGACAGCAGGAGCTTCAGGATGACAAAGAGAGAACGCAGAAAAGATCAGAAGTGAGTTCCTCAAGCACTAGTATTGCTCCAGGGGAGCTTGA ATGTGGGCCAGCAGCTGTTCCATCTGATAGGGCTCCAGTGGAAAGTGAGGACATTGTTTCGTCTCAATACTCAATCAGACATCCTCTGCACTCTGGAGGG AACAGGGATGATGAATTTGACCTGGATCTTGAGGATATTATGTTAATGGAAGCAATTTGGCTTTCCATTCAGGAAAATGGAAGACAGAAAAATCCGCTTT GTGGTGATGCTGCGCCATCTGAACAATTTATCATGGAAGCACGCTATGCTTCACCAGCAAAGGCACCACTGGCTGGATCATCATCCCCTTCTGGAGGTCT TGCATGTGCTATAGCTGCTCTTGCTGAGCGTCAGCAGATGGGTGGGGAATCACTTGTTCACAATAATGTAAATATGCCTTCATTCAACATGCTTCCAAGC ACTAGTAGCTTTTATAACAGGCATGTGCAGGATGCAGACGATTACTCTCCTGCGCAGAGCTCTAGCAATGTGCTGCCAGATTGCAGGATGATTGTGACAA CGGATGATGGGGACTGGGGTGCGGATCGTGGATCAGACGCAGCTGAAGCTGGGACCAGTTATGCTAGTTCTGAGACAGCAGAAGATGCTGGTGGAATATC TGCCCTATTACCCCCACCACCGCCAGATGAAATTGGGGGGAGCTTTCAGAATGTCTATGGAGCCATTGAGAGTTTTGAAGAGCAGATGATGCTAGCCACG GCCATTTCTCTTGCTGAGGCCCGAGCTATGACAAGTGAACCCCAAAGCGCATGGCAATAG
AA sequence Show only first row Show all	>Potri.011G096000.1 pacid=42781998 polypeptide=Potri.011G096000.1.p locus=Potri.011G096000 ID=Potri.011G096000.1.v4.1 annot-version=v4.1 MGNKLGRRRQVVDEMYTRPQGLYAHKDVDHKKLRKLILESKLAPCFPGDEDSCYDHEECPICFLYYPSLNRSRCCMKCVCTECFLQMKNPNSTRPTQCPF CKTANYAVEYRGVKTKEEKGLEQIEEQRVIEAKIRMRQQELQDDKERTQKRSEVSSSSTSIAPGELECGPAAVPSDRAPVESEDIVSSQYSIRHPLHSGG NRDDEFDLDLEDIMLMEAIWLSIQENGRQKNPLCGDAAPSEQFIMEARYASPAKAPLAGSSSPSGGLACAIAALAERQQMGGESLVHNNVNMPSFNMLPS TSSFYNRHVQDADDYSPAQSSSNVLPDCRMIVTTDDGDWGADRGSDAAEAGTSYASSETAEDAGGISALLPPPPPDEIGGSFQNVYGAIESFEEQMMLAT AISLAEARAMTSEPQSAWQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78420			RING/U-box superfamily protein...		Potri.011G096000 [exp]	0	1
AT2G13840			Polymerase/histidinol phosphat...		Potri.001G206400 [exp]	1.00	0.9308
AT1G24310			unknown protein		Potri.008G176100 [exp]	2.82	0.8980
					Potri.009G125700 [exp]	4.58	0.8581
AT5G16790		AtTHO7	Tho complex subunit 7/Mft1p (....		Potri.013G080200 [exp]	4.89	0.8607
AT2G28605			Photosystem II reaction center...		Potri.007G100800 [exp]	5.47	0.9041
AT3G13550		EMB144, COP10, ...	FUSCA 9, EMBRYO DEFECTIVE 144,...		Potri.001G089300 [exp]	7.74	0.8466
AT5G10620			methyltransferases (.1)		Potri.006G278500 [exp]	8.36	0.8613
AT1G32730			unknown protein		Potri.003G085901 [exp]	12.40	0.8271
AT1G55140			Ribonuclease III family protei...		Potri.003G038400 [exp]	12.64	0.8199
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.004G030000 [exp]	13.26	0.8557

Compare expression of checked genes

Potri.011G096000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.