Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17130 375 / 1e-130 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) AT2G32050 241 / 4e-79 Family of unknown function (DUF572) (.1) AT3G43250 223 / 7e-72 Family of unknown function (DUF572) (.1) AT2G29430 102 / 3e-27 Family of unknown function (DUF572) (.1) AT1G25682 79 / 2e-16 Family of unknown function (DUF572) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G377800 [exp] 510 / 0 AT1G17130 396 / 1e-138 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) Potri.008G115700 [exp] 75 / 5e-15 AT1G25682 446 / 7e-159 Family of unknown function (DUF572) (.1) Potri.010G130300 [exp] 75 / 5e-15 AT1G25682 436 / 3e-155 Family of unknown function (DUF572) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005575 [exp] 403 / 2e-141 AT1G17130 391 / 1e-136 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) Lus10013707 [exp] 392 / 7e-137 AT1G17130 391 / 8e-137 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) Lus10013706 [exp] 294 / 4e-101 AT1G17130 293 / 5e-101 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) Lus10040296 [exp] 81 / 4e-17 AT2G39630 476 / 3e-170 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10034268 [exp] 75 / 5e-15 AT1G25682 479 / 2e-172 Family of unknown function (DUF572) (.1) Lus10041495 [exp] 72 / 5e-14 AT1G25682 467 / 1e-166 Family of unknown function (DUF572) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04502 [poplar] [flax] DUF572 Family of unknown function (DUF572)
Representative CDS sequence Show only first row Show all	>Potri.011G096100.1 pacid=42781737 polypeptide=Potri.011G096100.1.p locus=Potri.011G096100 ID=Potri.011G096100.1.v4.1 annot-version=v4.1 ATGGGAGAAAGAAAGGTGTTAAACAAGTACTACCCACCAGATTTTGATCCATCGAAATTACCCAGGATCCGAAGACCCAAGAACCAACAGATAAAGGTCC GAATGATGCTTCCTATGAGCATCCGTTGCAATACTTGTGGTAATTACATCTATAAAGGCACCAAGTTTAATTCTCGCAAAGAAGATGTCATTGGCGAGAC GTATTTAGGAATACAAATATTTAGATTTTACTTCAAATGTACGAGGTGTTCGGCCGAGCTAGCAATGAAGACAGATCCTCAAAACTCGGATTATACGGTC GAAAGTGGTGCCACGCGGAATTTTGAACCTTGGCGTGCCGAGGATGAGGAACTGGACACTGAGAAGAAAAAGAGGGTTGCAGAAGAGATGGGGGATGCCA TGAAATCACTGGAGAACAGAACTTTGGATTCTAAAAGAGAGATTGACATTCTTGCTGCACTTGATGAAATGAAGTCCATGAAGTCTCGACATGCTACTGT CAGTGTCGATGCAATGCTTGAGGCTTTGCAGCGCACAGCTTCTGAAAAGGAGAGGAAGTTGGAGGAAGAGGATGAAGCTCTTATAAAATCATTATTCCAA CAAAGACAAACAGAGGTTATTCGAAGAATTTCAGATGAAGATTCTGATGACGATGAAGATTTTAACATGTCAAGTGATAAGTTGAAGAAGAGGAAGGTTG CTGATGAAGTTTCAAGTAAACCAACGGATTCACTGGCAAAAGCTAGTGTTTCAGATAGCTCAAATAACAGCGAAAATTCAAGTGCTTCAGGGACTCAAAA TGATGGCAAACCTAAATTTAGATCCCCGTTGATCAGGATATCTGTGAAAAAGAAACCAGTTGCAGTTTCTGACCGTAACAAGCCAGAGGAGAATAAACAA GTAGAGCAGAGTACAGCTAATGATCCAAGCATTGGTCTACAATCCCTATGCCAGAACTATGACAGCGATGATGAGGATGATTAG
AA sequence Show only first row Show all	>Potri.011G096100.1 pacid=42781737 polypeptide=Potri.011G096100.1.p locus=Potri.011G096100 ID=Potri.011G096100.1.v4.1 annot-version=v4.1 MGERKVLNKYYPPDFDPSKLPRIRRPKNQQIKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELAMKTDPQNSDYTV ESGATRNFEPWRAEDEELDTEKKKRVAEEMGDAMKSLENRTLDSKREIDILAALDEMKSMKSRHATVSVDAMLEALQRTASEKERKLEEEDEALIKSLFQ QRQTEVIRRISDEDSDDDEDFNMSSDKLKKRKVADEVSSKPTDSLAKASVSDSSNNSENSSASGTQNDGKPKFRSPLIRISVKKKPVAVSDRNKPEENKQ VEQSTANDPSIGLQSLCQNYDSDDEDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17130			Family of unknown function (DU...		Potri.011G096100 [exp]	0	1
AT1G36310			S-adenosyl-L-methionine-depend...		Potri.002G091300 [exp]	1.00	0.9253
AT4G23010		ATUTR2, UTR2	UDP-galactose transporter 2 (....		Potri.001G111000 [exp]	1.41	0.9081
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Potri.014G194700 [exp]	1.73	0.9051
AT3G55460		SCL30, At-SCL30	SC35-like splicing factor 30 (...		Potri.008G056600 [exp]	4.24	0.8899	Pt-SCL30.2
AT1G75510			Transcription initiation facto...		Potri.005G233800 [exp]	6.63	0.8970
AT5G59050			unknown protein		Potri.009G038600 [exp]	8.00	0.8890
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Potri.007G100600 [exp]	9.00	0.8885
AT1G55000			peptidoglycan-binding LysM dom...		Potri.013G021600 [exp]	9.21	0.8945
AT3G19910			RING/U-box superfamily protein...		Potri.005G090800 [exp]	9.79	0.8702
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.014G134900 [exp]	10.39	0.8373	NHX1.2

Compare expression of checked genes

Potri.011G096100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.