Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06230 243 / 7e-72 GTE4 global transcription factor group E4 (.1.2.3) AT1G73150 234 / 3e-71 GTE3 global transcription factor group E3 (.1) AT1G17790 217 / 1e-64 DNA-binding bromodomain-containing protein (.1) AT5G14270 146 / 1e-37 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT5G63320 139 / 6e-36 NPX1 nuclear protein X1 (.1.2.3) AT5G10550 137 / 2e-34 GTE2 global transcription factor group E2 (.1) AT5G65630 134 / 7e-34 GTE7 global transcription factor group E7 (.1) AT3G27260 131 / 3e-32 GTE8 global transcription factor group E8 (.1.2) AT3G01770 127 / 2e-31 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT2G34900 109 / 1e-26 GTE1, GTE01, IMB1 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G376400 [exp] 509 / 2e-179 AT1G06230 267 / 4e-82 global transcription factor group E4 (.1.2.3) Potri.013G118900 [exp] 311 / 5e-98 AT1G06230 463 / 5e-153 global transcription factor group E4 (.1.2.3) Potri.019G090700 [exp] 304 / 2e-95 AT1G06230 443 / 2e-145 global transcription factor group E4 (.1.2.3) Potri.001G285700 [exp] 214 / 9e-63 AT1G73150 214 / 4e-63 global transcription factor group E3 (.1) Potri.009G080000 [exp] 210 / 2e-61 AT5G65630 180 / 1e-49 global transcription factor group E7 (.1) Potri.015G091800 [exp] 151 / 3e-39 AT5G63320 521 / 6e-171 nuclear protein X1 (.1.2.3) Potri.012G094300 [exp] 151 / 4e-39 AT5G63320 513 / 9e-168 nuclear protein X1 (.1.2.3) Potri.001G335000 [exp] 145 / 3e-37 AT3G27260 460 / 5e-151 global transcription factor group E8 (.1.2) Potri.001G355300 [exp] 129 / 7e-32 AT5G46550 201 / 5e-58 DNA-binding bromodomain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033624 [exp] 295 / 7e-91 AT1G06230 494 / 2e-163 global transcription factor group E4 (.1.2.3) Lus10033623 [exp] 292 / 3e-90 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3) Lus10017661 [exp] 292 / 9e-90 AT1G06230 499 / 3e-165 global transcription factor group E4 (.1.2.3) Lus10032076 [exp] 153 / 9e-40 AT3G27260 450 / 6e-147 global transcription factor group E8 (.1.2) Lus10020470 [exp] 143 / 1e-38 AT5G65630 173 / 3e-49 global transcription factor group E7 (.1) Lus10007096 [exp] 146 / 6e-38 AT1G06230 213 / 1e-62 global transcription factor group E4 (.1.2.3) Lus10034067 [exp] 145 / 1e-37 AT1G06230 304 / 7e-95 global transcription factor group E4 (.1.2.3) Lus10014609 [exp] 145 / 3e-37 AT3G27260 458 / 2e-150 global transcription factor group E8 (.1.2) Lus10039630 [exp] 125 / 2e-30 AT5G65630 191 / 5e-54 global transcription factor group E7 (.1) Lus10011989 [exp] 110 / 2e-25 AT5G46550 244 / 3e-74 DNA-binding bromodomain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [poplar] [flax] Bromodomain Bromodomain CL0665 [poplar] [flax] BET PF17035 [poplar] [flax] BET Bromodomain extra-terminal - transcription regulation
Representative CDS sequence Show only first row Show all	>Potri.011G096400.3 pacid=42780287 polypeptide=Potri.011G096400.3.p locus=Potri.011G096400 ID=Potri.011G096400.3.v4.1 annot-version=v4.1 ATGTCAGTACTACCCGGGTACGTGAGATTTGATGATGATAGTAGAGTTAAAATCAACTTGAATTCAAGGCCAAAATCTGAAATTAAACATCTAAAGAGGA AACTAGTGAATGAACTTCATCAAGTTAGAAGCTTGCGAAAGAAACTTGATTCCATAGAAATGTCTCAATCTTCCTTTAATGATAATCTTAATAATAGAAT AACAGGTAATAGTGGTGGTCATAGAATTGAAACTCTTGATAGGGTTAATTCTGAAGTTAGTTATGTGGGACACACCAATTCGCGGCCGTTGGATGGTAAT GAGAAGAAGAAAACCCCGGTGAATTCGAACAAGAAGTTGAAACAGTGTGGCGGTGGTGGGGGACAAGGGGTGGCGGTGGAGTTCAGTAAATATTTGGTTA AAGAGTGTGGGGAGTTGTTAGGGAAGTTAATGAAACATCAATATGGATGGGTGTTTAATGTGCCAGTGGATGTGAAAATGTTGAAGTTGCATGATTATTT TAAGATTATTAAGCATCCAATGGATTTAGGGACAGTGAAGAGTAGGCTGAGTAAGAATTGGTATAAGTCGCCAAAGGAGTTTGCTGAGGATGTTAGGTTG ACTTTTAATAATGCTATGAAGTATAATGAGAAAGGGCAGGATGTGCATACAATGGCAGATACATTGTTGAAGATTTTCGAGGAGAATTGGGCTAATTTTA AGGCTGAAACTAATTTTGATAAGAGGGGGGAGATGGGGTACGATGCTAGCTTGCAAACACCTGCGTCAAAGAGAGCTTCAGGTCCTCATGCTTCATCCCC TGCTTGTGGTTCTGCTTCTGCCTGTGCTCCCAGTCCTGCTCCTTTTCAACAGACAATGCCTTTAGAGACGAGAACTTTGGGTGGAACAGATTCTTTGACA GAGCTTGGGCATCCAAATATGAAAGCTGCTGATCAGGGTAGGGCATCAGTGTCGAAGAAGCCTAAGAAGGACACTGACAAAAGCAAAATGACTTACGAGG AGAAGCAGAAACTGAGTATAAGCCTGCAGAGTTTACCTTCAGAGAAACTAGAATCAGTTGTCCAGATTATTAGGAAGAGGAATCCTGGGCTTTTTCAACA AGAAGATGAGATTGAAGTGGATATTGATAGTTTTGATAATGAAACACTTTGGGAACTTCATAGTAATGTAACCAATTACCGGAAGAGTATAAGCAAGAAT GACAGAGAAGCTAAAGTTGCTCTTCAAGATAGAGAAGAAGGTGGCCACGATATGCTCGGGACTAAATTGACATCTGCTACTGCAGAGGCACCAAAGGAAC TTGGATCAGTACAAATGACTGTTCCCGCCTCTTCACCTATTAAAGAGCATAAGCAAGGCCATTGTATGAGCAGATCACGTTGTTCAAGCAGTTTTGGCAG TGGCTCCAGATCTTCTTCAAGTGGCTCTGATATTGATAGTTCATCAGGATCTGGGTCAGATGCAGGTCGTTGA
AA sequence Show only first row Show all	>Potri.011G096400.3 pacid=42780287 polypeptide=Potri.011G096400.3.p locus=Potri.011G096400 ID=Potri.011G096400.3.v4.1 annot-version=v4.1 MSVLPGYVRFDDDSRVKINLNSRPKSEIKHLKRKLVNELHQVRSLRKKLDSIEMSQSSFNDNLNNRITGNSGGHRIETLDRVNSEVSYVGHTNSRPLDGN EKKKTPVNSNKKLKQCGGGGGQGVAVEFSKYLVKECGELLGKLMKHQYGWVFNVPVDVKMLKLHDYFKIIKHPMDLGTVKSRLSKNWYKSPKEFAEDVRL TFNNAMKYNEKGQDVHTMADTLLKIFEENWANFKAETNFDKRGEMGYDASLQTPASKRASGPHASSPACGSASACAPSPAPFQQTMPLETRTLGGTDSLT ELGHPNMKAADQGRASVSKKPKKDTDKSKMTYEEKQKLSISLQSLPSEKLESVVQIIRKRNPGLFQQEDEIEVDIDSFDNETLWELHSNVTNYRKSISKN DREAKVALQDREEGGHDMLGTKLTSATAEAPKELGSVQMTVPASSPIKEHKQGHCMSRSRCSSSFGSGSRSSSSGSDIDSSSGSGSDAGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06230		GTE4	global transcription factor gr...		Potri.011G096400 [exp]	0	1
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Potri.004G018100 [exp]	1.00	0.7658	TOM1.2
AT2G42450			alpha/beta-Hydrolases superfam...		Potri.002G041000 [exp]	8.12	0.7524
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Potri.006G039800 [exp]	8.12	0.7000
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Potri.001G079300 [exp]	10.00	0.7368
					Potri.010G023150 [exp]	17.14	0.6134
AT2G21860			violaxanthin de-epoxidase-rela...		Potri.005G085800 [exp]	22.58	0.7074
AT5G52882			P-loop containing nucleoside t...		Potri.012G035400 [exp]	23.55	0.7486
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.016G012700 [exp]	28.98	0.6539
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.005G146700 [exp]	37.62	0.6764	Pt-XF1.2
AT1G32260			unknown protein		Potri.001G138200 [exp]	41.27	0.6913

Compare expression of checked genes

Potri.011G096400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.