Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15050 263 / 1e-87 IQD10 IQ-domain 10 (.1) AT2G33990 219 / 2e-70 IQD9 IQ-domain 9 (.1) AT2G26180 135 / 2e-36 IQD6 IQ-domain 6 (.1) AT3G52290 123 / 7e-32 IQD3 IQ-domain 3 (.1) AT1G72670 118 / 3e-30 IQD8 IQ-domain 8 (.1) AT3G22190 116 / 1e-29 IQD5 IQ-domain 5 (.1.2) AT2G26410 117 / 2e-29 IQD4 IQ-domain 4 (.1) AT5G03040 115 / 5e-29 IQD2 IQ-domain 2 (.1.2.3) AT3G09710 107 / 5e-26 IQD1 IQ-domain 1 (.1.2) AT1G17480 96 / 3e-22 IQD7 IQ-domain 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G375700 [exp] 501 / 0 AT3G15050 245 / 1e-80 IQ-domain 10 (.1) Potri.011G063200 [exp] 294 / 3e-99 AT2G33990 238 / 9e-78 IQ-domain 9 (.1) Potri.004G053000 [exp] 285 / 1e-95 AT2G33990 236 / 5e-77 IQ-domain 9 (.1) Potri.006G226600 [exp] 149 / 2e-41 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.001G215200 [exp] 133 / 1e-35 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.010G218100 [exp] 132 / 4e-35 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.006G131100 [exp] 124 / 4e-32 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.016G086300 [exp] 120 / 9e-31 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.009G015800 [exp] 119 / 1e-30 AT3G22190 286 / 9e-93 IQ-domain 5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025425 [exp] 226 / 2e-72 AT2G33990 243 / 1e-79 IQ-domain 9 (.1) Lus10015300 [exp] 224 / 9e-72 AT2G33990 242 / 3e-79 IQ-domain 9 (.1) Lus10013362 [exp] 141 / 1e-38 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10041419 [exp] 134 / 6e-36 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10036508 [exp] 134 / 1e-35 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10004107 [exp] 127 / 4e-33 AT3G22190 308 / 6e-101 IQ-domain 5 (.1.2) Lus10019916 [exp] 120 / 1e-30 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10013522 [exp] 120 / 1e-30 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10026486 [exp] 115 / 1e-28 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10025593 [exp] 90 / 7e-20 AT3G59690 498 / 1e-172 IQ-domain 13 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G096500.2 pacid=42780833 polypeptide=Potri.011G096500.2.p locus=Potri.011G096500 ID=Potri.011G096500.2.v4.1 annot-version=v4.1 ATGGGCTGTTTCTTCTCTGGATACTGGTTAAAGTCGATTATAGGCCTGAGAAAAGCGAAGAGAGATAGATCGAAGAAAGTAAAGGTACATTCAGCTATTG AAAAAGCAAATGAGTCAAAGGAGAGTCCACCCACAAATGGAGAATCGAGTAGTTTCGCCCATGCTGATTTGCAGAGCAGTCATGCTGTTCCTGGATTGTC TGCTGAATATATAGCTGCCGTCAGGATTCAAAAGGCTTTTCGGGCATACAAGGCAAGAAAGGCAGTGCAACGTCTTAAGGGAGCTGTGAGATTTAATGTA CAAATCCATGGTCAAGATACTCAAAAGCAAGCATCAAGCACGTTGAGCCATATACATTCATGGAGCAATATACAGACCCAGATAAGAGCTCGCCGACACC ATATGGTTACAGAAGGCCGTATTAAGCAAAAGAAATTGGAAAACCAGTTGAAACTTGACGCCAAACTTCAAGAGTTAGAGGTGGAGTGGTGCGGTGGCTC CGATACCATGGAGGAGATTCTTTCCAGGATCCAACAAAGAGAAGAAGCAGCAGTAAAGCGTGAACGAGCCATGGCATATGCCTTCTCTCATCAGTGGAGG GCCAATCCTACACGATATCTAGGCCAGGCCTATTACATTCTTGGCGAAGAAAACTGGGGTTGGAGCTGGAAGGAGCGCTGGGTTGCTGCGCGGCCATGGG AGGTTCGAGTTCATGCTGAGCCTAATAACCTCAAGAAAGTTCATTCCAGACAAGGGAGCAAAACGGAGATTAAAATACCAGTACTGTCAACCAAACATGC TCTGTCAAACGGGAAGGTGAATGCTAAAGCTAAAAAGTTGTCCAGCCCAGCCGTGGATTATCAAGCAACCCAGGATGCCAGTTCTACTGCCGGCTCATCT CATTTGTTGATTCAAAGTTGA
AA sequence Show only first row Show all	>Potri.011G096500.2 pacid=42780833 polypeptide=Potri.011G096500.2.p locus=Potri.011G096500 ID=Potri.011G096500.2.v4.1 annot-version=v4.1 MGCFFSGYWLKSIIGLRKAKRDRSKKVKVHSAIEKANESKESPPTNGESSSFAHADLQSSHAVPGLSAEYIAAVRIQKAFRAYKARKAVQRLKGAVRFNV QIHGQDTQKQASSTLSHIHSWSNIQTQIRARRHHMVTEGRIKQKKLENQLKLDAKLQELEVEWCGGSDTMEEILSRIQQREEAAVKRERAMAYAFSHQWR ANPTRYLGQAYYILGEENWGWSWKERWVAARPWEVRVHAEPNNLKKVHSRQGSKTEIKIPVLSTKHALSNGKVNAKAKKLSSPAVDYQATQDASSTAGSS HLLIQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15050		IQD10	IQ-domain 10 (.1)		Potri.011G096500 [exp]	0	1
AT2G34410		RWA3	REDUCED WALL ACETYLATION 3, O-...		Potri.001G352300 [exp]	1.73	0.9528
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.007G135300 [exp]	2.00	0.9486
AT1G19870		IQD32	IQ-domain 32 (.1)		Potri.005G236200 [exp]	2.82	0.9370
AT2G47010			unknown protein		Potri.019G076900 [exp]	3.31	0.9285
					Potri.004G048201 [exp]	5.29	0.9157
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Potri.001G416300 [exp]	5.47	0.9408	ATK2.2
AT1G74690		IQD31	IQ-domain 31 (.1)		Potri.017G079600 [exp]	5.47	0.9251
AT2G47360			unknown protein		Potri.014G119900 [exp]	6.32	0.9365
AT5G26780		SHM2	serine hydroxymethyltransferas...		Potri.002G109200 [exp]	7.48	0.9334	SHMT3
AT2G36880		MAT3	methionine adenosyltransferase...		Potri.006G123200 [exp]	7.48	0.9314	AdoMet6

Compare expression of checked genes

Potri.011G096500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.