Plant FIBer expression Database

Potri.011G096702 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G375900
[exp]
0 / 1 AT1G73170 717 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Potri.010G228600
[exp]
0 / 1 AT3G10420 819 / 0.0 SEEDLING PLASTID DEVELOPMENT 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.011G096702.1 pacid=42781447 polypeptide=Potri.011G096702.1.p locus=Potri.011G096702 ID=Potri.011G096702.1.v4.1 annot-version=v4.1
ATGCTTTGTTTTTCTCTGCTACCAATCCCACGCCATCTACCTCTGCCTCCCTTTTCACTCACCGGAACCCTTCAGTTCTCTCCAAAAATTTTTGTGGGTT
TCTTTCGATTTCGAATTCTTCAGTTCCTCCTTCACCGGGAGCTTTATGACGTGGTTGAGGTGGTCATGGGTTTGGGTGGGAAGCCACTAGCGAGATTTCC
ATGCATCTGGGGACTTTGTTTTATCGGATTGTCCCATCACCCTTTAGGGTCCCCAGCATGCTACTTCACAGGTATTCATAGAGGAAGTTGA
AA sequence
>Potri.011G096702.1 pacid=42781447 polypeptide=Potri.011G096702.1.p locus=Potri.011G096702 ID=Potri.011G096702.1.v4.1 annot-version=v4.1
MLCFSLLPIPRHLPLPPFSLTGTLQFSPKIFVGFFRFRILQFLLHRELYDVVEVVMGLGGKPLARFPCIWGLCFIGLSHHPLGSPACYFTGIHRGS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.011G096702
[exp]
0 1
AT2G29950 ELF4-L1 ELF4-like 1 (.1) Potri.001G251600
[exp]
2.00 0.9007
AT5G48030 GFA2 gametophytic factor 2 (.1) Potri.001G271300
[exp]
4.47 0.8638 Pt-GFA2.2
AT1G28200 FIP1 FH interacting protein 1 (.1) Potri.005G159100
[exp]
9.48 0.8280
AT3G61770 Acid phosphatase/vanadium-depe... Potri.002G171300
[exp]
11.22 0.8353
AT2G24390 AIG2-like (avirulence induced ... Potri.006G278900
[exp]
13.56 0.8281
AT1G52920 GPCR, GCR2 G-PROTEIN COUPLED RECEPTOR 2, ... Potri.001G403200
[exp]
14.83 0.8204
AT5G25520 SPOC domain / Transcription el... Potri.018G034500
[exp]
16.24 0.8196
AT3G22450 Ribosomal L18p/L5e family prot... Potri.008G153100
[exp]
18.41 0.8401
AT5G53530 VPS26A vacuolar protein sorting 26A (... Potri.009G021200
[exp]
20.00 0.8118
AT1G62390 CLMP1, Phox2 Phox2, CLUMPED CHLOROPLASTS 1,... Potri.004G002900
[exp]
22.44 0.8352

Potri.011G096702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.