Plant FIBer expression Database

Potri.011G097050 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G375600
[exp]
46 / 3e-07 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.011G097050.1 pacid=42780880 polypeptide=Potri.011G097050.1.p locus=Potri.011G097050 ID=Potri.011G097050.1.v4.1 annot-version=v4.1
ATGAAGAGCAAATCAAGAAACGTAGCACTAGCAATGGTAGTGTGTGGTGGTGGTATTCGTATGGGCAACATTAGTAGATCGTCTAGGAAAAAAAAAACAA
AAGAAGGTGCCACAGAGAGGGCTTGGTGCTGCACAAGTAGAGAAAATAAGACTAGAAGAGCAACAAAAGAAGGTAAATGCCTCATCAGGAAGTTCATCAT
CATCTTTGCTAGATTTTCAGATGGAGCCCCCTTCAAACCAAACTTATTACGTACGACAACTATATATACGTATGATTCACCTGTTTGGATACGGGAAGAG
AAGGTGATTTATTTTTTTCTCGTAATCAAGGAGATGCATGGTGAATTCAGAAATGCATTTTCAGGTTTTTCTTTTATTTATTTATTTATTTATTTTTCCT
ATCAATTAATTGCGTACTCTACTTTACAAGTGTTCTTATTGCATATCTGTGCCCGTTCTAGAGAAGGCTTCTCGTGTTCTCCTTCCATCTTGGAGCCTAC
TTCAAAGAAGAGGGGGCTTGCAATGGAGGTTTTCTCAGTACTCTAG
AA sequence
>Potri.011G097050.1 pacid=42780880 polypeptide=Potri.011G097050.1.p locus=Potri.011G097050 ID=Potri.011G097050.1.v4.1 annot-version=v4.1
MKSKSRNVALAMVVCGGGIRMGNISRSSRKKKTKEGATERAWCCTSRENKTRRATKEGKCLIRKFIIIFARFSDGAPFKPNLLRTTTIYTYDSPVWIREE
KVIYFFLVIKEMHGEFRNAFSGFSFIYLFIYFSYQLIAYSTLQVFLLHICARSREGFSCSPSILEPTSKKRGLAMEVFSVL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.011G097050
[exp]
0 1
Potri.013G154650
[exp]
4.58 0.5283
Potri.003G032701
[exp]
12.00 0.5249
AT1G15170 MATE efflux family protein (.1... Potri.010G116900
[exp]
16.09 0.4864
AT4G27730 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPT... Potri.012G019700
[exp]
26.26 0.4994
AT4G25760 ATGDU2 glutamine dumper 2 (.1) Potri.004G108560
[exp]
29.24 0.4763
AT5G59970 Histone superfamily protein (.... Potri.002G143850
[exp]
31.84 0.4602
Potri.017G071950
[exp]
61.64 0.4451
AT1G43730 RNA-directed DNA polymerase (r... Potri.016G103750
[exp]
73.11 0.4105
AT5G20710 BGAL7 beta-galactosidase 7 (.1) Potri.018G062800
[exp]
73.79 0.4105
AT3G05610 Plant invertase/pectin methyle... Potri.005G022900
[exp]
104.16 0.3973 PEF1.2

Potri.011G097050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.