Plant FIBer expression Database

Potri.011G097700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G15095 158 / 4e-40 HCF243 high chlorophyll fluorescence 243, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G373100
[exp]
729 / 0 AT3G15095 155 / 2e-39 high chlorophyll fluorescence 243, unknown protein
Potri.006G130500
[exp]
47 / 2e-05 AT5G03110 145 / 2e-41 unknown protein
Potri.016G086900
[exp]
45 / 0.0001 AT5G03110 120 / 8e-32 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013679
[exp]
239 / 8e-68 AT3G15095 130 / 2e-32 high chlorophyll fluorescence 243, unknown protein
Lus10017938
[exp]
217 / 2e-60 AT3G15095 169 / 4e-44 high chlorophyll fluorescence 243, unknown protein
Lus10019920
[exp]
49 / 8e-06 AT5G03110 71 / 4e-14 unknown protein
Lus10026490
[exp]
48 / 2e-05 AT5G03110 61 / 6e-11 unknown protein
PFAM info
Representative CDS sequence
>Potri.011G097700.1 pacid=42781070 polypeptide=Potri.011G097700.1.p locus=Potri.011G097700 ID=Potri.011G097700.1.v4.1 annot-version=v4.1
ATGAAACAAAAAAACATGGACACATTTGTAGACAGACCCCATCGAAGCAACAGCAACAATAGCAGTAGCACTAGTAACAACAACAGCAACACCAGTGAGC
TCTTTATTTGTTTCACCTCACGCCTCTCTTCTTCCTCCATGAAGCTCTCTTCAAAATCTATTCTCAGCCCTGGCCGTCACAGAGATTCCTCACAAATCTC
TCTCTCTAACTCTCTCAGTAGAAGACTTAGAAGCAGTGGCAGCATGAAAGGTGGACAAGCTTCACCAATGTTCCCTACGAATGGCAAAAAACGTGGCTGT
GCTTTTGAGAATCCAGAACCCTCTTCTCCAAAGGTTACTTGCATTGGTCAAGTGAGAGTTAAGACCAAGAAACAAGGGAAGAAACTGAGGACGAGATCAA
AGAGAAGAGGGGAAATAAGTTTTAGGAGAGTAGACCAAAACAGCAATACTTTTGAAGGGAGCAACAATCATCATGATTTGATAAACAATCAGTTCTTGAA
TCAGCAGCAGCAGCAACAGGAGGGTTTGTCACACAGGAATCAAAGATGGGTACATTTTCCTGTGACAATATGTGAAGCTTTAAGGGCTTTTGGGGCTGAG
TTTAATTGCTTTTTACCTTGCCGGTCTTCATGTATGGCAAGTGAGAAAGAGAAAGAAGAGAATACCGCTGCAGCAGGATCTAATAACAACGGTAGTAGTT
CTTGTGGGGCGGTGTTTGCAAGGTGGTTAGTGGCAGTGCAGGAGGGAGAAGGGAAAGGGAAGGAGATAGAGTTGGTGGTTGGAGAAGAAGTAGTAGAAGA
AGAAAGAGATGAGAGGAGGAGGAGTTATAGGAGACATATTTTTGAAGATATTGAATTTAAAGAAGAAGAAGGACATGTTTTTGAAGGAGGAAATGCGGGT
TTGCAAGAAGAAGAGGCAAGGGTAAGTATTTGTATACCACCAAAGAATGCTTTGTTGTTGATGAGGTGTAGATCTGATCCAGTTAAAATGGCTGCTCTTG
CTAATAAGTTCTGGGAATCTCCTGCTCCACAAGATGAAGAAGACGAGGAAGAAGATAATGAAGAGGGTGAAAAGGATAGAAATTTGGAAGCAGAAGTAGA
CAAGTTTATCAATATAGAAAATAAAAGTGAAGTTAAGGCAAGTCAAGAAGAGGAAATAAAAGTTGAGCAAGAAATTATAATTGAGCAGAAACAGGATTTG
ACTGTGTCTGATAAGTTGGCTTTTTGTGAAACTATTGAAGAGCATTATCAAATTATTCAAGAAACTGAAGAAAGTTTGGTTATTTTGGAAGCTGGAGAAG
ATAGCCAAGAAATTGGAAGCACAGATGATAATACCGATGGTGTTCTACAAGAAGTTAATTTAGTGAAACAGGAAGAAGAGGAATCGGAAACTCCAGGGGT
CTTGAACTTGCAGCCAACATCCTCAACACAAGAAACTGTTAGTCTATGCAGTGACGAGTCTTCTTCACATGATCAAGAAATTGTAGATCCAGCGGCCTTG
ATGAATAACGAAAATGAATACAAGGTGGTTCAAGAAAATGAGGAGGATAATCAAGAAGACAGGGTATTCCAAGCAGAACAAGAGCAAGTTGTGCAAGGGC
TGAGTGATGACATTGAGGAGAATTCAGTGTCTGTACGGTTCGAACAAGAAACTTTACAAGTTGCTGTCCAAGACTTACAGGACCAAGAACCAGAGTCCCT
TTCTGTAGCTGAATTACAAGTACAGGAGACGGAGGAAGAGAAAGAGACCACCGAGAATGAGACCGAGCTAGCAGAGGAAGAACCCGAAGACCCGAAGACC
CATGTAAATGGTCAAACGGGTGTCAAGTCAAGGGAAGGAGATAATAGTCAACCACTTTTACCAGATTGCTTGCTGTTAATGATGTGTGAGCCCAAGCTGT
CAATGGAGGTATCCAAGGAAACCTGGGTTTGCAGTACAGACTTCATCAGATGGTTACCAGAGCATTCAAGGCCAGTCAGCAAAACCAACGGTAAAGATGA
GCCCAAGAAAAGAGTTAGCATCGACATTAAGCCTGCGCAGGTGTATAATAATGGTAATAACAGCAATAGCTTGCAGCAGCCACGTAGGTCCTCTTGTTCA
TACCCGGCTAAGCCACCGGCTCGTTGTGCCGGGACAGAGTCCATGTCCACAATGATAGAGCAGAAGCTGGTAGGAGCCAAGGCATATGAGCCGTTTGTTC
TGACGCGCTGCAAGTCTGAGCCAATGAGGTCAGCCTCTAAGCTTGCGCCAGAGGCTTGTTTCTGGAAGAATAGAAAACTTGAGCCGCATCGACCAGCGGC
GACGCTTGGGGTCGGAGCGGCTGGGGTTGGGTTTTGA
AA sequence
>Potri.011G097700.1 pacid=42781070 polypeptide=Potri.011G097700.1.p locus=Potri.011G097700 ID=Potri.011G097700.1.v4.1 annot-version=v4.1
MKQKNMDTFVDRPHRSNSNNSSSTSNNNSNTSELFICFTSRLSSSSMKLSSKSILSPGRHRDSSQISLSNSLSRRLRSSGSMKGGQASPMFPTNGKKRGC
AFENPEPSSPKVTCIGQVRVKTKKQGKKLRTRSKRRGEISFRRVDQNSNTFEGSNNHHDLINNQFLNQQQQQQEGLSHRNQRWVHFPVTICEALRAFGAE
FNCFLPCRSSCMASEKEKEENTAAAGSNNNGSSSCGAVFARWLVAVQEGEGKGKEIELVVGEEVVEEERDERRRSYRRHIFEDIEFKEEEGHVFEGGNAG
LQEEEARVSICIPPKNALLLMRCRSDPVKMAALANKFWESPAPQDEEDEEEDNEEGEKDRNLEAEVDKFINIENKSEVKASQEEEIKVEQEIIIEQKQDL
TVSDKLAFCETIEEHYQIIQETEESLVILEAGEDSQEIGSTDDNTDGVLQEVNLVKQEEEESETPGVLNLQPTSSTQETVSLCSDESSSHDQEIVDPAAL
MNNENEYKVVQENEEDNQEDRVFQAEQEQVVQGLSDDIEENSVSVRFEQETLQVAVQDLQDQEPESLSVAELQVQETEEEKETTENETELAEEEPEDPKT
HVNGQTGVKSREGDNSQPLLPDCLLLMMCEPKLSMEVSKETWVCSTDFIRWLPEHSRPVSKTNGKDEPKKRVSIDIKPAQVYNNGNNSNSLQQPRRSSCS
YPAKPPARCAGTESMSTMIEQKLVGAKAYEPFVLTRCKSEPMRSASKLAPEACFWKNRKLEPHRPAATLGVGAAGVGF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G15095 HCF243 high chlorophyll fluorescence ... Potri.011G097700
[exp]
0 1
AT1G50420 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) Potri.009G048700
[exp]
2.00 0.7842 Pt-SCL3.1
AT2G46680 HD ATHB7, ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX ... Potri.002G176300
[exp]
5.29 0.7764 Pt-ATHB.4
AT1G75080 BZR BZR1 BRASSINAZOLE-RESISTANT 1, Bras... Potri.014G041600
[exp]
5.47 0.6815 Pt-BES1.1
AT5G30490 unknown protein Potri.010G151300
[exp]
11.83 0.7131
AT4G24220 5[beta]-StR, 5[... VEIN PATTERNING 1, Δ4,5-s... Potri.014G019500
[exp]
18.76 0.6731
AT5G64260 EXL2, MSJ1.10 EXORDIUM like 2 (.1) Potri.017G051700
[exp]
18.97 0.7272
AT1G45249 bZIP AtABF2, ATAREB1... ABSCISIC ACID RESPONSIVE ELEME... Potri.014G028200
[exp]
24.16 0.7107 Pt-ABF2.1
AT4G12070 unknown protein Potri.001G017000
[exp]
24.45 0.6474
AT5G34850 ATPAP26, PAP26 purple acid phosphatase 26 (.1... Potri.006G063700
[exp]
24.69 0.7256
AT1G21410 SKP2A F-box/RNI-like superfamily pro... Potri.002G074700
[exp]
27.49 0.6474

Potri.011G097700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.