Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	DRT111.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30480 349 / 9e-119 DRT111 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1) AT2G16940 53 / 2e-07 Splicing factor, CC1-like (.1.2.3) AT5G09880 50 / 2e-06 Splicing factor, CC1-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G372600 [exp] 395 / 4e-137 AT1G30480 327 / 5e-110 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1) Potri.004G040900 [exp] 52 / 3e-07 AT1G60900 541 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.011G050400 [exp] 52 / 4e-07 AT1G60900 532 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.007G009800 [exp] 46 / 3e-05 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023355 [exp] 389 / 2e-134 AT1G30480 470 / 3e-166 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1) Lus10038451 [exp] 374 / 2e-128 AT1G30480 455 / 6e-160 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1) Lus10005059 [exp] 56 / 3e-08 AT2G16940 534 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10025075 [exp] 55 / 6e-08 AT2G16940 565 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10034466 [exp] 54 / 9e-08 AT2G16940 569 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10027830 [exp] 54 / 1e-07 AT2G16940 553 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10037299 [exp] 53 / 2e-07 AT1G60900 629 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Lus10035713 [exp] 50 / 2e-06 AT1G60900 640 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Lus10000826 [exp] 46 / 4e-05 AT5G09880 589 / 0.0 Splicing factor, CC1-like (.1) Lus10024026 [exp] 45 / 6e-05 AT4G36690 678 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [poplar] [flax] G-PATCH PF01585 [poplar] [flax] G-patch G-patch domain
Representative CDS sequence Show only first row Show all	>Potri.011G098100.2 pacid=42781650 polypeptide=Potri.011G098100.2.p locus=Potri.011G098100 ID=Potri.011G098100.2.v4.1 annot-version=v4.1 ATGTTAGGTGGTGGATTATATGGAGATCTGCCTCCGCCATCCGCCGCGGCGGAGGAAGATAAACCAACTACCACCACCTCCACTGTATGGTCTACTAGTA CCTTAATGGCTCCACCTACTCTTCGTAAACCTATGCCCCCACCACCACCACAAACTATTTTAAAATCCCAAAACAAACCTAAACCTTCCAAAACTTTACT TTCTCCGGCACCGCCTGTCACTGTCCTACCCGATGAGGTGGCTGCGCAGCCGGCATTGGTAGGGGTGAATTCGGTGGTCATTGAGGAGTATGATCCCGCG AGGCCGAATGATTATGACGATTATAGGAGGGAGAAGAAAAGGAAGGCCATGGAAGCAGAGAGGTTGAGGGAGATTGAGAGGAGGAGGCAAGAGGAGGAGG AAAGAGAGAGTAGGGAGAGGGAAGACAGGGAGAGGGATACGAATATTTCCGGGGAGGAAGCGTGGAAGAGGCGTGCCGCGATGAGTGGTGGTGGTGTTCC GAGGAGTCCGTCGCCACCCAGTAATGGGGATGGGTTTCGTATTGGGAAGTCAGAGACGGTTGGGTTGGGAGTTGGTGCTGGTGGACAAATGACTGCCGCC CAGAGGATGATGGCGAAGATGGGGTGGAAGGAAGGGCAAGGATTGGGGAAGCAGGAGCAGGGGATTACGACGCCGTTGATGGCCAAGAAGACTGATCGGA GAGCTGGGGTTATTGTGAATGCCAGTGAGTCAAAGCCAGAGAAGAAGGTGAAGAGTGTGAATCTCAATGGAACGCCTACTCGAGTTTTGCTACTTAGGAA TATGGTGGGTCCTGGTGAGGTAGATGATGAACTAGAAGATGAGGTTGCATCCGAGTGTGCAAAGTATGGAACAGTCACTCGGGTTCTTATCTTCGAGATC ACTGAGCTGAACTTTCCACGTGAAGAGGCAGTTAGAATTTTCATACAGTTTGAGAGATCAGAAGAAACAACAAAAGCATTGATTGATCTTGATGGGCGGT TTTTTGGGGGTAATGTGGTTCGAGCAACCTTCTATGATGAGGAGAGGTTCAGCAAGAATGAGTTGGCTCCTATCCCTGGTGAAATCCCTGGCTTTTGA
AA sequence Show only first row Show all	>Potri.011G098100.2 pacid=42781650 polypeptide=Potri.011G098100.2.p locus=Potri.011G098100 ID=Potri.011G098100.2.v4.1 annot-version=v4.1 MLGGGLYGDLPPPSAAAEEDKPTTTTSTVWSTSTLMAPPTLRKPMPPPPPQTILKSQNKPKPSKTLLSPAPPVTVLPDEVAAQPALVGVNSVVIEEYDPA RPNDYDDYRREKKRKAMEAERLREIERRRQEEEERESREREDRERDTNISGEEAWKRRAAMSGGGVPRSPSPPSNGDGFRIGKSETVGLGVGAGGQMTAA QRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASESKPEKKVKSVNLNGTPTRVLLLRNMVGPGEVDDELEDEVASECAKYGTVTRVLIFEI TELNFPREEAVRIFIQFERSEETTKALIDLDGRFFGGNVVRATFYDEERFSKNELAPIPGEIPGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30480		DRT111	DNA-DAMAGE-REPAIR/TOLERATION P...		Potri.011G098100 [exp]	0	1	DRT111.1
AT5G17900			microfibrillar-associated prot...		Potri.013G065600 [exp]	1.00	0.9171
AT5G08550		ILP1	increased level of polyploidy1...		Potri.008G002600 [exp]	3.46	0.8891
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Potri.010G122500 [exp]	7.93	0.8481
AT2G40360			Transducin/WD40 repeat-like su...		Potri.003G009600 [exp]	9.00	0.8653
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283200 [exp]	9.21	0.8572
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Potri.016G082900 [exp]	9.48	0.8275
AT1G52080		AR791	actin binding protein family (...		Potri.003G047200 [exp]	12.32	0.8627
AT3G61800			unknown protein		Potri.014G099300 [exp]	12.48	0.8380
AT5G40340			Tudor/PWWP/MBT superfamily pro...		Potri.004G130600 [exp]	12.68	0.8517
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.013G046300 [exp]	12.72	0.8213

Compare expression of checked genes

Potri.011G098100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.