Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PHB.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34710 1350 / 0 HD ATHB14, PHB-1D, ATHB-14, PHB PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT1G30490 1318 / 0 HD ATHB9, PHV PHAVOLUTA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT5G60690 1149 / 0 HD IFL1, REV REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT1G52150 1125 / 0 HD ATHB15, ICU4, CNA, ATHB-15 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) AT4G32880 1088 / 0 HD ATHB8, ATHB-8 homeobox gene 8 (.1) AT4G04890 70 / 4e-12 HD PDF2 protodermal factor 2 (.1) AT4G21750 69 / 1e-11 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT4G00730 66 / 5e-11 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT3G61150 67 / 6e-11 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT1G05230 66 / 9e-11 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G372300 [exp] 1572 / 0 AT2G34710 1358 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.009G014500 [exp] 1161 / 0 AT5G60690 1382 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.001G188800 [exp] 1146 / 0 AT1G52150 1476 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Potri.004G211300 [exp] 1142 / 0 AT5G60690 1375 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.003G050100 [exp] 1141 / 0 AT1G52150 1488 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Potri.006G237500 [exp] 1133 / 0 AT4G32880 1412 / 0.0 homeobox gene 8 (.1) Potri.018G045100 [exp] 1131 / 0 AT4G32880 1400 / 0.0 homeobox gene 8 (.1) Potri.011G025000 [exp] 81 / 2e-15 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.004G074800 [exp] 80 / 4e-15 AT1G73360 640 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023357 [exp] 1389 / 0 AT2G34710 1316 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10038449 [exp] 1375 / 0 AT2G34710 1336 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10000719 [exp] 1160 / 0 AT5G60690 1409 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10021470 [exp] 1154 / 0 AT5G60690 1419 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10037568 [exp] 1129 / 0 AT1G52150 1441 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Lus10011426 [exp] 1047 / 0 AT4G32880 1338 / 0.0 homeobox gene 8 (.1) Lus10011616 [exp] 1040 / 0 AT4G32880 1293 / 0.0 homeobox gene 8 (.1) Lus10002037 [exp] 814 / 0 AT1G52150 1049 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Lus10006765 [exp] 93 / 3e-19 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10007650 [exp] 86 / 7e-17 AT4G04890 1121 / 0.0 protodermal factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0209 [poplar] [flax] Bet_v_1_like PF01852 [poplar] [flax] START START domain CL0183 [poplar] [flax] PAS_Fold PF08670 [poplar] [flax] MEKHLA MEKHLA domain
Representative CDS sequence Show only first row Show all	>Potri.011G098300.1 pacid=42780958 polypeptide=Potri.011G098300.1.p locus=Potri.011G098300 ID=Potri.011G098300.1.v4.1 annot-version=v4.1 ATGGCGCTTTCTATGCACAGTAAGGACAAGCAGATGGATTCAAGTAAGTATGTGCGGTATACACCTGAGCAAGTTGAGGCTTTGGAGAGGGTGTATACAG AATGTCCAAAGCCTAGTTCCTTGAGAAGACAACAACTCATTAGAGAGTGTCCTATTCTCTGCAACATTGAGCCTAAACAGATCAAAGTCTGGTTTCAAAA TCGCAGATGTCGTGAAAAACAGAGAAAGGAATCTTCTCGTCTCCAGACAGTGAATAGAAAGCTGACTGCCATGAACAAGCTGTTAATGGAAGAGAATGAC CGTTTGCAGAAGCAAGTCTCCCATTTGGTTTATGAAAATGGATACATGCGCCAACAAATTCAGACCGCTTCAGCAACGGCCACAGACAATAGCTGTGAGT CTGTGGTCATGAGCGGTCAGCACCAACAACAGCAAAACCCAACACCTCAGCAACCCCAAAGGGATGCTAACAACCCAGCTGGTCTTCTCACAATAGCTGA GGAGACCCTGGCAGAGTTCCTTTCCAAAGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCAGATTCTATTGGAATCGTT GCTGTTTCCCGCAACTGCAGTGGGGTAGCAGCGCGAGCCTGTGGCCTTGTGAGCCTGGAGCCCATTAAGGTTGCTGAAATCCTCAAAGATCGTCCTTCTT GGTTTCGTGACTGCCGATGCCTAGACATAATGAGTGTGATTCCTACAGGAAGTGGAGGGACAATTGAGCTGATATACATGCAGACTTATGCACCTACAAC ACTGGCCGCAGCACGTGACTTTTGGACACTAAGATACACTACAACCTTGGAAGACGGGAGTCTTGTGATATGTGAGAGGTCATTGACTTCTTCTACTGGT GGCCCAACAGGACCTCCTTCTTCAAGCTTTGTAAGAGCTGATATGCTTCCTAGTGGCTATCTAATTCGACCATGTGAGGGTGGTGGCTCCATCATTCACA TTGTTGATCATGTTGACTTAGATGTTTGGAGTGTTCCTGAAGTTCTGAGGCCACTTTATGAGTCATCCAAAATTCTTGCTCAGAAAATGACCATGGCGGC CTTGCGGTACATAAGACAAATTGCACAAGAGACTAGTGGGGAAATTCAGTATGGAGGTGGTCGTCAGCCTGCTGTTTTAAGGACATTTAGTCAGAGGCTC TGCAGGGGTTTCAATGATGCTGTAAATGGATTCACAGATAGTGGGTGGTCACTTCTGGATGGTGATGGTGGGGATGATGTGACCATCGTCATAAATTCAT CGCCAACTAAATTTCTAGGATCTCAATACAACGCATCTATATCACCTACATTTGGAGGAGTCCTGTGTGCGAAGGCATCAATGTTGCTGCAGAATGTTCC TCCTGCTTTGCTTGTTCGTTTTCTGAGAGAACATCGTTCGGAGTGGGCTGACTATGGGGTTGATGTGTACTCTGCTGCATGTCTTAAAGCAAGTCCTTAT GCAGTTCCATGTACAAGACCTGGTGGCTTCCCTAGTAGCCAGGTCATTTTACCTCTTGCACATACCGTGGAGCATGAGGAGTTCTTGGAGGTAGTTCGGC TGGAGGGCCATGCATTCTCCCCAGAAGATGTAGCCCTGGCACAGGATATGTACTTGTTGCAGCTATGCAGCGGAGTTGATGAAAATGCTCTTGGTGCTTG TGCTCAGCTCGTCTTTGCGCCTATTGATGAATCCTTTGCTGATGATGCACCATTGTTGCCATCTGGATTTCGTGTCATACCATTAGATCCTAAAACAGAT GCACCTGCTGCTACTCGAACTTTAGATTTAGCCTCTACACTTGAAGTAGGACCTGGTGGTGCCCGTCCAGCTAGTGAAGCTGACACCAACAGTTATAACC TTAGGTCAGTACTGACAATCGCTTTCCAATTTACGTTTGAGAACCACTTCCGAGACAATGTGGCTGCTATGGCTCGCCAATATGTGCGTGGTGTTGTGGC GTCTGTTCAGAGGGTTGCAATGGCAATTTCCCCTTCCCGGCTCAGCTCCAATATGGGGCCGAAGTCCCTTCCTGTCTCTCCTGAGGCTTTAACTTTAGCT CGATGGATATACCGAAGCTACAGGATTCATACTGGAGGAGAACTATTTCGGGTTGACTCCCAAGCTGGGGATGCTTTGCTGAAGCGACTGTGGCACCATT CAGATGCAATTATGTGCTGCTCCTTGAAAACAAACGCATCTCCAGTTTTCACTTTTGCGAACCAGGCTGGACTTGATATGCTTGAAACTACTCTTGTGGC CCTTCAAGATATCATGCTTGACAAGATTCTTGATGAAGCAGGTCGGAAGATTCTCTGCTCTGAGTTCTCTAAAATAATGCAACAGGGATATGCTTATCTG CCCGCCGGAATATGTGTATCCAGCATGGGGAGGCCGGTCTCCTACGAGCAGGCCATTGCATGGAAAGTTCTTAATGATGATAATTCCAACCACTGTCTGG CTTTCATGTTCATTAACTGGTCCTTTGTGTAG
AA sequence Show only first row Show all	>Potri.011G098300.1 pacid=42780958 polypeptide=Potri.011G098300.1.p locus=Potri.011G098300 ID=Potri.011G098300.1.v4.1 annot-version=v4.1 MALSMHSKDKQMDSSKYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECPILCNIEPKQIKVWFQNRRCREKQRKESSRLQTVNRKLTAMNKLLMEEND RLQKQVSHLVYENGYMRQQIQTASATATDNSCESVVMSGQHQQQQNPTPQQPQRDANNPAGLLTIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIV AVSRNCSGVAARACGLVSLEPIKVAEILKDRPSWFRDCRCLDIMSVIPTGSGGTIELIYMQTYAPTTLAAARDFWTLRYTTTLEDGSLVICERSLTSSTG GPTGPPSSSFVRADMLPSGYLIRPCEGGGSIIHIVDHVDLDVWSVPEVLRPLYESSKILAQKMTMAALRYIRQIAQETSGEIQYGGGRQPAVLRTFSQRL CRGFNDAVNGFTDSGWSLLDGDGGDDVTIVINSSPTKFLGSQYNASISPTFGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDVYSAACLKASPY AVPCTRPGGFPSSQVILPLAHTVEHEEFLEVVRLEGHAFSPEDVALAQDMYLLQLCSGVDENALGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPKTD APAATRTLDLASTLEVGPGGARPASEADTNSYNLRSVLTIAFQFTFENHFRDNVAAMARQYVRGVVASVQRVAMAISPSRLSSNMGPKSLPVSPEALTLA RWIYRSYRIHTGGELFRVDSQAGDALLKRLWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCSEFSKIMQQGYAYL PAGICVSSMGRPVSYEQAIAWKVLNDDNSNHCLAFMFINWSFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Potri.011G098300 [exp]	0	1	Pt-PHB.1
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.015G038700 [exp]	2.44	0.8546	PIN1,PIN1.3
AT2G15730			P-loop containing nucleoside t...		Potri.004G143300 [exp]	2.82	0.8283
AT4G27640			ARM repeat superfamily protein...		Potri.008G085800 [exp]	5.47	0.8148
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Potri.001G372300 [exp]	5.74	0.8608	PHB.2
AT1G67690			Zincin-like metalloproteases f...		Potri.010G054466 [exp]	6.00	0.8105
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.001G086000 [exp]	12.32	0.7382
AT1G30440			Phototropic-responsive NPH3 fa...		Potri.001G357100 [exp]	13.41	0.7561
AT1G29470			S-adenosyl-L-methionine-depend...		Potri.002G075800 [exp]	13.49	0.8139
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Potri.002G040600 [exp]	14.76	0.7226
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Potri.014G105101 [exp]	15.42	0.7935

Compare expression of checked genes

Potri.011G098300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.