Plant FIBer expression Database

Potri.011G098600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G12290 474 / 2e-170 Amino acid dehydrogenase family protein (.1)
AT4G00620 372 / 3e-129 EMB3127 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
AT2G38660 348 / 7e-120 Amino acid dehydrogenase family protein (.1.2.3.4)
AT4G00600 288 / 6e-97 Amino acid dehydrogenase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G157100
[exp]
372 / 4e-129 AT4G00620 545 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
Potri.006G114100
[exp]
345 / 2e-118 AT2G38660 456 / 2e-161 Amino acid dehydrogenase family protein (.1.2.3.4)
Potri.014G080701
[exp]
69 / 8e-15 AT4G00620 101 / 1e-27 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006425
[exp]
375 / 1e-130 AT4G00620 529 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
Lus10011368
[exp]
375 / 2e-130 AT4G00620 523 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
Lus10018843
[exp]
366 / 9e-128 AT4G00620 489 / 1e-175 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
Lus10017822
[exp]
366 / 1e-127 AT4G00620 488 / 4e-175 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
Lus10022670
[exp]
371 / 7e-126 AT4G00620 527 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
Lus10043398
[exp]
341 / 5e-117 AT2G38660 469 / 2e-166 Amino acid dehydrogenase family protein (.1.2.3.4)
Lus10034187
[exp]
341 / 6e-117 AT2G38660 473 / 5e-168 Amino acid dehydrogenase family protein (.1.2.3.4)
Lus10012502
[exp]
311 / 4e-102 AT4G00620 442 / 6e-152 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0603 AA_dh_N PF00763 THF_DHG_CYH Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
CL0063 NADP_Rossmann PF02882 THF_DHG_CYH_C Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
Representative CDS sequence
>Potri.011G098600.1 pacid=42781965 polypeptide=Potri.011G098600.1.p locus=Potri.011G098600 ID=Potri.011G098600.1.v4.1 annot-version=v4.1
ATGGCGTCCCAATCGGAACATAAAGCCACCGTAATCGACGGCAAGCTCATCGCTCAAACAATCCGATCAGAAATCGCCGAGGAAGTCCGTCAACTCTCAG
AGAAATACGGCAAGGTTCCTGGGTTAGCTGTAGTAATTGTGGGCAATAGGAAGGATTCTCAAAGCTATGTGGGTATGAAAAGAAAAGCGTGTGCTGAAGT
TGGGATTCAGTCCTTTGACATGGACCTCCCTGAGCAAATATCTGAAGCTGAACTCGTTTCCAAGGTTCATGAGTTGAACGCAAATCCTGATGTGCATGGA
ATATTGGTTCAGCTGCCGCTGCCAAAGCATATAAACGAAGAGAAAGTTTTAAGTGAAATTAGTCTTGCAAAGGATGTAGATGGCTTTCATCCTCTGAACA
TCGGCAAACTTGCAATGAAAGACAGAGAGCCGCTTTTCCAACCCTGCACCCCCAAGGGTTGTCTTGAACTTCTACATCGAAGTGGTGTAAGTATAAAGGG
AAAAAGGGCAGTAGTTGTAGGTCGCAGTAACATAGTTGGATTACCAGTTTCCTTGCTTCTTCTGAAAGCAGATGCCACTGTTACTGTGGTCCATTCACGT
TCTAATGATCAAGAAAGCATCATTCGTGAAGCTGACATCATTATTGCAGCAGCAGGGCAACCAATGATGATAAAAGGAAGTTGGATTAAACCTGGTGCTG
CAGTTATTGATGTTGGGACAAATGCTGTCGATGATCCAAGTAGAAAGACAGGTTATAGGTTAGTGGGAGATGTGGATTTCAATGAAGCATGTAAGATAGC
TGGATGTATTACTCCAGTTCCTGGGGGCGTGGGTCCAATGACTGTTGCAATGCTGCTCAAGAACACTTTGGAAGGTGCAAAGCGGGTTATTGTGCAGTAG
AA sequence
>Potri.011G098600.1 pacid=42781965 polypeptide=Potri.011G098600.1.p locus=Potri.011G098600 ID=Potri.011G098600.1.v4.1 annot-version=v4.1
MASQSEHKATVIDGKLIAQTIRSEIAEEVRQLSEKYGKVPGLAVVIVGNRKDSQSYVGMKRKACAEVGIQSFDMDLPEQISEAELVSKVHELNANPDVHG
ILVQLPLPKHINEEKVLSEISLAKDVDGFHPLNIGKLAMKDREPLFQPCTPKGCLELLHRSGVSIKGKRAVVVGRSNIVGLPVSLLLLKADATVTVVHSR
SNDQESIIREADIIIAAAGQPMMIKGSWIKPGAAVIDVGTNAVDDPSRKTGYRLVGDVDFNEACKIAGCITPVPGGVGPMTVAMLLKNTLEGAKRVIVQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G12290 Amino acid dehydrogenase famil... Potri.011G098600
[exp]
0 1
AT5G53850 haloacid dehalogenase-like hyd... Potri.001G399000
[exp]
4.00 0.8332
AT5G47760 ATPK5, ATPGLP2 2-phosphoglycolate phosphatase... Potri.016G004200
[exp]
7.34 0.8214
AT3G13800 Metallo-hydrolase/oxidoreducta... Potri.003G036800
[exp]
8.66 0.7945
AT4G39630 unknown protein Potri.007G085100
[exp]
8.83 0.7903
AT5G37055 ATSWC6, SEF SERRATED LEAVES AND EARLY FLOW... Potri.013G152600
[exp]
9.38 0.7811
AT4G28440 Nucleic acid-binding, OB-fold-... Potri.007G137600
[exp]
11.13 0.8076
AT3G07170 Sterile alpha motif (SAM) doma... Potri.002G244700
[exp]
12.00 0.7559
AT1G76860 Small nuclear ribonucleoprotei... Potri.002G068800
[exp]
19.07 0.7757
AT1G78420 RING/U-box superfamily protein... Potri.011G096000
[exp]
20.12 0.7872
AT3G13550 EMB144, COP10, ... FUSCA 9, EMBRYO DEFECTIVE 144,... Potri.001G089300
[exp]
20.97 0.7879

Potri.011G098600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.