Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) AT1G67390 79 / 2e-15 F-box family protein (.1) AT3G60790 62 / 4e-10 F-box family protein (.1) AT5G56420 55 / 8e-08 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT1G13780 48 / 1e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) AT2G39415 45 / 1e-05 F-box family protein (.1) AT5G56370 47 / 2e-05 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT1G49610 44 / 0.0001 F-box family protein (.1) AT1G69630 44 / 0.0002 F-box/RNI-like superfamily protein (.1) AT5G62970 44 / 0.0003 Protein with RNI-like/FBD-like domains (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G107600 [exp] 58 / 8e-09 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.015G002100 [exp] 55 / 4e-08 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G395000 [exp] 45 / 7e-05 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2) Potri.011G136200 [exp] 44 / 0.0003 AT1G56400 215 / 2e-64 F-box family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019144 [exp] 46 / 5e-05 AT1G13570 482 / 6e-170 F-box/RNI-like superfamily protein (.1) Lus10042304 [exp] 44 / 5e-05 AT2G39415 59 / 1e-11 F-box family protein (.1) Lus10035564 [exp] 44 / 0.0001 AT3G58900 79 / 1e-16 F-box/RNI-like superfamily protein (.1.2.3.4) Lus10028721 [exp] 43 / 0.0001 AT5G53840 56 / 5e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10038935 [exp] 44 / 0.0002 AT1G60400 64 / 3e-11 F-box/RNI-like superfamily protein (.1) Lus10028722 [exp] 43 / 0.0005 AT2G42730 76 / 1e-14 F-box family protein (.1.2) Lus10008295 [exp] 41 / 0.0008 AT1G78840 67 / 2e-13 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0271 [poplar] [flax] PF08387 [poplar] [flax] FBD FBD
Representative CDS sequence Show only first row Show all	>Potri.011G098700.1 pacid=42780609 polypeptide=Potri.011G098700.1.p locus=Potri.011G098700 ID=Potri.011G098700.1.v4.1 annot-version=v4.1 ATGGAGATGGATATTGAAGGTATTGATCAAATTAGCAGCCTTCCTGACGGACTTTTATCACGGATTATTTCACATCTAAGTATCTCAGAAAGCATACGAA CAAGCATCTTGTCAAGAAGATGGAAAAACGTATGGAAATCTTCGTCTTGCCTTCACTTTGATACAAACTTTCTCGTCAAATTCTGCATAGATATTAACAA CAGGGATGCGAGTTTCAGAGATTATAACAGAAAGAGGCTATATGACGAGATTTCACGAGCCACAGGTATAGTTGAAAGGGTCATTGATTCTCATGAAACA AAACTGGTATCTTGCAGTATTTCTCACGTAGAAGATAATTTTAAATCTGGTCTCGTTGAAAGATTGATCAAAAACCTTAAAGAGAAAAAGCTCATCGAAG AACTCTCCCTCGTGTGCGAACAACTCTTTGTATCCGATAGGTTTCAGTGCAATTTGCCTCCAGGTATATTTTTCTGTAGAACCCTACATGTTTTGGAATT GAAGGGATATAGGCTTAAAGATGCTTCTCCTTTTGAAAGCTGCTGTAATCTTGTCACCTTAAGGCTCAATTCGGTGAATCTTGATGATAAAACCCTCTCT CGGGTTATTTTAAATTGCATGTTCTTGGAGGATTTGTGTCTTTGTTCTTGCACTGGCTTAAAAAAGATAGAGATCCATGATAAGAATCTCAAGTCTTTGA AACTTAACGGCTTGGATTTGGAAGGAATTGATATCGAAGCTATGGGCCTCAGCATTCTTGTGCTTAATTCAGTGTCGTGCTCGGTATATATGACAATTAA TACTCCGAGTCTCGTGGAGTTTGGATTTTGTTCTGATGGTGGTCGACTCCAAAAAAGCACACAAATCTATTCCAGGATCATAGATTTTCTTGAGCGTTGC TGTGGCCTCTTGCAGCAAAACCCTAATAATGGTTTTTTGAAGTGCTCCAATCCATTTGGGCAGTTGCATACTCTATCTATCAGTTTAGCTTTGGACAGTC AAATGGAACAACACATCTTAGATCACATCTTCAGACTATGCACCCATTTGCAGAGACTCGGTATCAGTATTCCACCCAACAATAGGGGGCCTTCCGACTG GGAATTACCGTATCCTACTTCCATGTTCTGGGAGAAAAGGGAGCTGCATGATAGCATCACACATAGCCTGAAGTTGGTGAAGATAAAAGGATTCTGTGGG AAAGAAGAGGAGATCATTTTTGCTAAACATCTCATAAGAAAGGCTCCCATGCTGAGGAGATTTGTGATTGAATGTGGCGAGAACTGCTCAGAGACAGGAG CAAGGGAAACTTTAGGCTTACCACTCGAGCCAAGGGCCTCCGTCAATCTCTCTATAGTCTTGAAGCCAAAGGTAGATGGAAGTTTTCAGAATTGGGTGTC AACCTTAAACAAAAATCCCTTTTGTTAA
AA sequence Show only first row Show all	>Potri.011G098700.1 pacid=42780609 polypeptide=Potri.011G098700.1.p locus=Potri.011G098700 ID=Potri.011G098700.1.v4.1 annot-version=v4.1 MEMDIEGIDQISSLPDGLLSRIISHLSISESIRTSILSRRWKNVWKSSSCLHFDTNFLVKFCIDINNRDASFRDYNRKRLYDEISRATGIVERVIDSHET KLVSCSISHVEDNFKSGLVERLIKNLKEKKLIEELSLVCEQLFVSDRFQCNLPPGIFFCRTLHVLELKGYRLKDASPFESCCNLVTLRLNSVNLDDKTLS RVILNCMFLEDLCLCSCTGLKKIEIHDKNLKSLKLNGLDLEGIDIEAMGLSILVLNSVSCSVYMTINTPSLVEFGFCSDGGRLQKSTQIYSRIIDFLERC CGLLQQNPNNGFLKCSNPFGQLHTLSISLALDSQMEQHILDHIFRLCTHLQRLGISIPPNNRGPSDWELPYPTSMFWEKRELHDSITHSLKLVKIKGFCG KEEEIIFAKHLIRKAPMLRRFVIECGENCSETGARETLGLPLEPRASVNLSIVLKPKVDGSFQNWVSTLNKNPFC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80960			F-box and Leucine Rich Repeat ...		Potri.011G098700 [exp]	0	1
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Potri.017G064901 [exp]	16.37	0.8149
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Potri.004G115500 [exp]	24.31	0.9508
AT1G30870			Peroxidase superfamily protein...		Potri.003G156100 [exp]	31.43	0.8456
AT4G33590			unknown protein		Potri.007G112500 [exp]	34.11	0.7897
					Potri.018G115550 [exp]	34.38	0.9072
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Potri.001G404000 [exp]	37.14	0.8055
					Potri.001G169351 [exp]	39.69	0.9508
					Potri.006G190850 [exp]	45.51	0.8266
					Potri.001G196900 [exp]	46.55	0.9508
					Potri.001G276804 [exp]	52.51	0.9508

Compare expression of checked genes

Potri.011G098700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.