Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14660 466 / 3e-163 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT3G14690 461 / 4e-161 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14680 461 / 4e-161 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT3G14650 454 / 3e-158 CYP72A11 "cytochrome P450, family 72, subfamily A, polypeptide 11", cytochrome P450, family 72, subfamily A, polypeptide 11 (.1) AT3G14640 451 / 3e-157 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14610 447 / 8e-156 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT3G14630 445 / 6e-155 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT3G14620 424 / 1e-146 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT1G17060 318 / 2e-105 SHK1, CHI2, SOB7, CYP72C1 SUPPRESSOR OF PHYB-4 7, SHRINK 1, CHIBI 2, cytochrome p450 72c1 (.1) AT2G26710 304 / 1e-99 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G098800 [exp] 702 / 0 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101700 [exp] 702 / 0 AT3G14690 606 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G099400 [exp] 698 / 0 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101401 [exp] 696 / 0 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101500 [exp] 696 / 0 AT3G14690 609 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G099800 [exp] 695 / 0 AT3G14690 612 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101250 [exp] 661 / 0 AT3G14690 568 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G117600 [exp] 376 / 8e-128 AT3G14620 479 / 7e-166 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.011G117700 [exp] 351 / 2e-120 AT3G14620 368 / 9e-125 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042487 [exp] 441 / 7e-153 AT3G14690 604 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10026178 [exp] 425 / 1e-146 AT3G14690 607 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10042486 [exp] 400 / 3e-137 AT3G14690 580 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10026177 [exp] 348 / 2e-117 AT3G14690 514 / 6e-180 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10010802 [exp] 301 / 1e-100 AT1G75130 432 / 6e-150 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10026085 [exp] 304 / 2e-99 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10026084 [exp] 303 / 4e-99 AT2G26710 375 / 6e-125 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10017775 [exp] 303 / 7e-98 AT3G14630 359 / 2e-117 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) Lus10016310 [exp] 298 / 3e-97 AT1G75130 596 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10019184 [exp] 296 / 9e-97 AT3G14680 369 / 2e-122 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.011G099200.2 pacid=42781020 polypeptide=Potri.011G099200.2.p locus=Potri.011G099200 ID=Potri.011G099200.2.v4.1 annot-version=v4.1 ATGATACCTGCGTTTTCCGAAAGTTGTAGCGGGATGATTAACAAGTGGGAGAAGCTGGTCTCTGTAGACGAGGGCTCATGTGAATTGGATGTCTGGCCTG ATCTTCAAGGCTTAACATGTGATGCTATTTCTCGAACGTCGTTTGGAAGTAATTACGAAGAAGGAAAAAGAATATTTGACCTCCTCAAGGAACTTACCGA TCTTACAGTTCATTTTATAATAAAAGCAATTGTCATACCAGGGTACAGGTTTCTGCCGATCCCATCTAATAGAAGGCTAAAAGCTATTGACAAAGAAATA AAAGCTTCTCTTAATGCTCTCATCAACAAAAGAGAGCAAGCAATGAGTGCTGGTGAAGATGCAAAGAATGACTTGTTGGGTTTACTTCTGGAATCCAATT TTAGAGAAATACAAGAGCATGGAAATACCAAGAGCGTCGGAATGAGCATTGAAGATGTGATTGATGAATGTAAAATATTCTACGTTGCTGGACAAGAAAC AACCTCAGTTCTTCTTACCTGGACCATGGTTTTATTGGCTCAGTATCCGAATTGGCAAGCACGCGCAAGAGAAGAGGTTGTGCAAGTCTTTGGTAACAAA AAACCAGATTTCGATGGGCTAAATCACCTTAAAGTTGTTACCATGATTTTGTATGAAGTTCTTAGGTTATACCCGCCGGTAATTATGCTTAATCGAGATG TTCATGAAGAAATAAAGCTTGGAAATTTGCTATTACCTGCCGGAGTGCAGATCTCGGTGCCAACAATCCTCCTTCACCAAGATCATGAACTATGGGGTGA TGATGCCTCTGAGTTCAAACCAGAGAGGTTTGCTGAAGGTGTTTCAAAGGCAACAAAGAGTCAAGTCTCATTCCTTCCATTTGGATGGGGTCCTCGAATA TGCGTTGGACAAAACTTTGCTTTGATTGAAGCAAAAATAGCTGTGGCAATGGTTTTACAGCTCTACTCTTTTGAGCTCTCTCCGTCGTATATTCATGCTC CTCGCACAGTCGTAACTCTTCAGCCACAGCATGGTGCTCCCATGATATTACGTAAACTCTAA
AA sequence Show only first row Show all	>Potri.011G099200.2 pacid=42781020 polypeptide=Potri.011G099200.2.p locus=Potri.011G099200 ID=Potri.011G099200.2.v4.1 annot-version=v4.1 MIPAFSESCSGMINKWEKLVSVDEGSCELDVWPDLQGLTCDAISRTSFGSNYEEGKRIFDLLKELTDLTVHFIIKAIVIPGYRFLPIPSNRRLKAIDKEI KASLNALINKREQAMSAGEDAKNDLLGLLLESNFREIQEHGNTKSVGMSIEDVIDECKIFYVAGQETTSVLLTWTMVLLAQYPNWQARAREEVVQVFGNK KPDFDGLNHLKVVTMILYEVLRLYPPVIMLNRDVHEEIKLGNLLLPAGVQISVPTILLHQDHELWGDDASEFKPERFAEGVSKATKSQVSFLPFGWGPRI CVGQNFALIEAKIAVAMVLQLYSFELSPSYIHAPRTVVTLQPQHGAPMILRKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14660		CYP72A13	"cytochrome P450, family 72, s...		Potri.011G099200 [exp]	0	1
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Potri.011G099701 [exp]	2.44	0.8656
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Potri.011G101250 [exp]	5.91	0.8090
AT1G05940		CAT9	cationic amino acid transporte...		Potri.002G137000 [exp]	17.23	0.6960	PtrCAT9
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Potri.003G078601 [exp]	20.17	0.6790
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Potri.014G069600 [exp]	20.97	0.6716
AT5G37360			unknown protein		Potri.013G050300 [exp]	27.74	0.7680
AT2G33255			Haloacid dehalogenase-like hyd...		Potri.010G063700 [exp]	39.49	0.6769
AT5G61340			unknown protein		Potri.004G102800 [exp]	45.60	0.6542
AT3G47590			alpha/beta-Hydrolases superfam...		Potri.018G068000 [exp]	45.91	0.7145
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Potri.011G101700 [exp]	51.69	0.6431

Compare expression of checked genes

Potri.011G099200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.