Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78520 127 / 6e-39 Carbohydrate-binding X8 domain superfamily protein (.1) AT2G43670 107 / 4e-31 Carbohydrate-binding X8 domain superfamily protein (.1) AT3G28250 102 / 4e-29 Carbohydrate-binding X8 domain superfamily protein (.1) AT5G53600 82 / 2e-21 Carbohydrate-binding X8 domain superfamily protein (.1) AT4G09462 82 / 3e-21 Carbohydrate-binding X8 domain superfamily protein (.1) AT4G05430 81 / 1e-20 Carbohydrate-binding X8 domain superfamily protein (.1) AT4G09464 81 / 1e-20 Carbohydrate-binding X8 domain superfamily protein (.1) AT4G09467 81 / 1e-20 Carbohydrate-binding X8 domain superfamily protein (.1) AT4G09465 80 / 2e-20 Carbohydrate-binding X8 domain superfamily protein (.1) AT5G63225 80 / 2e-20 Carbohydrate-binding X8 domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G101351 [exp] 252 / 1e-88 AT1G78520 126 / 1e-38 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.011G099000 [exp] 160 / 1e-52 AT1G78520 133 / 4e-42 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.011G101451 [exp] 157 / 2e-51 AT1G78520 124 / 2e-38 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.001G380600 [exp] 157 / 4e-51 AT1G78520 145 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.001G351600 [exp] 113 / 1e-33 AT1G78520 119 / 9e-36 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.002G007300 [exp] 91 / 2e-22 AT4G29360 339 / 1e-111 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.014G114500 [exp] 84 / 5e-22 AT1G66870 96 / 1e-26 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.001G240000 [exp] 89 / 1e-21 AT5G24318 508 / 2e-178 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.008G056000 [exp] 86 / 2e-20 AT3G55430 494 / 1e-173 O-Glycosyl hydrolases family 17 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042492 [exp] 130 / 4e-40 AT1G78520 127 / 3e-39 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10026175 [exp] 126 / 2e-37 AT1G78520 114 / 2e-32 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10016539 [exp] 86 / 2e-20 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040808 [exp] 82 / 4e-19 AT5G24318 484 / 2e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040294 [exp] 82 / 4e-19 AT3G55430 483 / 2e-169 O-Glycosyl hydrolases family 17 protein (.1) Lus10005459 [exp] 80 / 8e-19 AT5G24318 341 / 3e-115 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040461 [exp] 79 / 4e-18 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10039923 [exp] 75 / 7e-18 AT4G34480 93 / 5e-25 O-Glycosyl hydrolases family 17 protein (.1) Lus10005166 [exp] 78 / 9e-18 AT5G24318 385 / 1e-129 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004962 [exp] 78 / 1e-17 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.011G099600.1 pacid=42781563 polypeptide=Potri.011G099600.1.p locus=Potri.011G099600 ID=Potri.011G099600.1.v4.1 annot-version=v4.1 ATGGAAAGTAAACGAATCCAACTTAAATTGGGTAAATTTTTGGTTGTATATTGTCCTAATTCCAAGAAATTTGCTTTGACAATAATATTGCAGAAAACTT GGTGTGTGGCCAAGCCATCGTCGGATCAAGCAACTTTACTAGCGAATATCAATTACGCATGCTCTCACGTGGATTGCCAGATTCTACAAAAGGGTTACCC TTGCTTTTCTCCAGATAGTCTCATAAGCCATGCATCAATAGCCATGAATCTGTACTACCAATGTAAGGGAAGGAACCGCTGGAATTGTGATTTCAGGGAC TCTGGCCTCATTGTCAAGACTGGTCCAAGTAAGGACTACTACATGTATGATGCATGGCAACAATGA
AA sequence Show only first row Show all	>Potri.011G099600.1 pacid=42781563 polypeptide=Potri.011G099600.1.p locus=Potri.011G099600 ID=Potri.011G099600.1.v4.1 annot-version=v4.1 MESKRIQLKLGKFLVVYCPNSKKFALTIILQKTWCVAKPSSDQATLLANINYACSHVDCQILQKGYPCFSPDSLISHASIAMNLYYQCKGRNRWNCDFRD SGLIVKTGPSKDYYMYDAWQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78520			Carbohydrate-binding X8 domain...		Potri.011G099600 [exp]	0	1
AT1G78520			Carbohydrate-binding X8 domain...		Potri.011G101351 [exp]	1.00	0.9216
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Potri.016G007200 [exp]	8.60	0.7337
AT3G05520			Subunits of heterodimeric acti...		Potri.005G025300 [exp]	10.39	0.8353
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Potri.005G251400 [exp]	12.84	0.8068	Pt-CYCB2.2
AT3G47610			transcription regulators;zinc ...		Potri.003G168100 [exp]	13.41	0.7998
AT3G03550			RING/U-box superfamily protein...		Potri.019G043900 [exp]	14.14	0.8133
AT3G16060			ATP binding microtubule motor ...		Potri.001G182300 [exp]	18.52	0.7979
AT2G33320			Calcium-dependent lipid-bindin...		Potri.013G048400 [exp]	21.49	0.7247
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Potri.006G110500 [exp]	27.14	0.7855
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Potri.011G165100 [exp]	28.14	0.7940

Compare expression of checked genes

Potri.011G099600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.