Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17050 427 / 3e-148 SPS2 solanesyl diphosphate synthase 2 (.1) AT1G78510 422 / 1e-146 SPS1 solanesyl diphosphate synthase 1 (.1.2) AT2G34630 189 / 1e-55 GPPS, GPS1 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) AT3G14510 103 / 6e-25 Polyprenyl synthetase family protein (.1) AT4G36810 102 / 6e-24 GGPS1 geranylgeranyl pyrophosphate synthase 1 (.1) AT3G29430 96 / 8e-22 Terpenoid synthases superfamily protein (.1) AT3G14550 94 / 6e-21 GGPS3 geranylgeranyl pyrophosphate synthase 3 (.1) AT3G32040 92 / 1e-20 Terpenoid synthases superfamily protein (.1) AT3G14530 92 / 2e-20 Terpenoid synthases superfamily protein (.1) AT2G18620 91 / 4e-20 Terpenoid synthases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G099500 [exp] 805 / 0 AT1G78510 415 / 8e-144 solanesyl diphosphate synthase 1 (.1.2) Potri.001G380500 [exp] 608 / 0 AT1G78510 597 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Potri.011G101200 [exp] 600 / 0 AT1G17050 397 / 2e-137 solanesyl diphosphate synthase 2 (.1) Potri.010G138800 [exp] 182 / 7e-53 AT2G34630 551 / 0.0 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) Potri.006G135300 [exp] 180 / 3e-52 AT2G34630 592 / 0.0 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) Potri.005G127100 [exp] 102 / 8e-24 AT4G36810 444 / 2e-156 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.004G090600 [exp] 99 / 6e-23 AT4G36810 419 / 1e-146 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.007G031100 [exp] 96 / 8e-22 AT4G36810 467 / 1e-165 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124600 [exp] 94 / 4e-21 AT4G36810 388 / 2e-134 geranylgeranyl pyrophosphate synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005570 [exp] 447 / 3e-156 AT1G78510 564 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Lus10042491 [exp] 423 / 1e-146 AT1G17050 548 / 0.0 solanesyl diphosphate synthase 2 (.1) Lus10013703 [exp] 422 / 7e-143 AT1G78510 542 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Lus10023287 [exp] 190 / 4e-56 AT2G34630 541 / 0.0 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) Lus10016803 [exp] 96 / 1e-21 AT4G36810 488 / 2e-173 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028509 [exp] 94 / 5e-21 AT4G36810 437 / 2e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10022499 [exp] 94 / 5e-21 AT4G36810 491 / 8e-175 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017625 [exp] 91 / 6e-20 AT4G36810 423 / 5e-148 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017624 [exp] 83 / 5e-17 AT4G36810 439 / 5e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028508 [exp] 78 / 1e-15 AT4G36810 380 / 9e-132 geranylgeranyl pyrophosphate synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [poplar] [flax] Terp_synthase PF00348 [poplar] [flax] polyprenyl_synt Polyprenyl synthetase
Representative CDS sequence Show only first row Show all	>Potri.011G101301.1 pacid=42780944 polypeptide=Potri.011G101301.1.p locus=Potri.011G101301 ID=Potri.011G101301.1.v4.1 annot-version=v4.1 ATGACTTGCCGTAATCTTGATTTTGGAAGGCCTAAACTTCATTTGGTGGCTTGTAGCTTCTCCTCTAGTGATTCAATACATAGGTATTCGGTGAGGAATT ATGCAAAGTCAGTTTCTAAGAGTTGTAACAGAGATTATGGTTTCAGGAGAATGGTTTGTTGCCGGCGAGATATTGCTAGGTGTCGAGTTTCTTCAACAAA AACCCCTCAGGCTTTACTTGCAAGAGTTGCTGAAGGTCCCACAGGACTTCTGAATTTGAAGAAAGAGTCAAGAGAACCAGTTTCATTAACAAATTTGTTT GAAGTGGTTGCTGATGATCTTCTGAATCTTAAGAAAAATCTTCGGTCTATTGATGCTGCAGAAAATATGGTTTTGATGTCTGCAGCTGAGCAGATATTTG GTGCTGGTGGGAAGAGAATGCGACCAGCTCTGGTCTTTCTACTGTCAAGAGCCACGGTGGAAGTAGTCGGGGATCTTACAACTGAACATCAGCGTTTAGC GGAGATTATTGAGATGATCCACACTGCAAGTTTAATACATGATGATTTATTGGATGAAAGTGGCATGCGAAGAGGGAAGGAAACTTACTGGCTGGGGGAG TTTATGTTTGCTCAATCGTCATGGTACCTAGCGAATCTTGAAAATATTGAACTCATTAAGCTTATCAGCTCGGTAGGTCTGCAACTCCATTCTGTATATC CGAGTATATATAGTCCAGTGTCTGATATAACCTTGGAGTTTTTGCACTATGCTATATATTATCTAATTTTAAAAAATTCTTACTACAAGACAGCCTCCTT AATTGCTGCTAGTACCAAAGGAGCTGCTATTTTTAGTGGGGTGGACAGTAATGTATGCGTGCTAATCTATGAATATGGTAAGAATCTTGGTCTATCCTTC CAAGTTGTGGATGACATATTAGATTTTACACAGTCAGCAAAGCTGCCGGGGAAGCCAGCTGGCAGTGACCTGGCAAAGGGGAACCTGACTGCTCCAGTAA TATTTGCTCTAGAGCAATCACCAAAACTAAGAGAAATAATCGAGACCGAGTTCCGTGTGAGTGTTTCTCTTGATGAAGCTACTGAGTTGGTTATGGACTG TGGTGGCATTGAAAGGGCACAGGAATTGGCAAAAGAGAGAGCTGATCTTGCAATTCAGAATCTCAGAAGTCTTCCTCGGGGATCCTATCAACCAGCTCTC GAGGAAATGGTGCTGTGCAATCTCGAACGGGTTCATTAG
AA sequence Show only first row Show all	>Potri.011G101301.1 pacid=42780944 polypeptide=Potri.011G101301.1.p locus=Potri.011G101301 ID=Potri.011G101301.1.v4.1 annot-version=v4.1 MTCRNLDFGRPKLHLVACSFSSSDSIHRYSVRNYAKSVSKSCNRDYGFRRMVCCRRDIARCRVSSTKTPQALLARVAEGPTGLLNLKKESREPVSLTNLF EVVADDLLNLKKNLRSIDAAENMVLMSAAEQIFGAGGKRMRPALVFLLSRATVEVVGDLTTEHQRLAEIIEMIHTASLIHDDLLDESGMRRGKETYWLGE FMFAQSSWYLANLENIELIKLISSVGLQLHSVYPSIYSPVSDITLEFLHYAIYYLILKNSYYKTASLIAASTKGAAIFSGVDSNVCVLIYEYGKNLGLSF QVVDDILDFTQSAKLPGKPAGSDLAKGNLTAPVIFALEQSPKLREIIETEFRVSVSLDEATELVMDCGGIERAQELAKERADLAIQNLRSLPRGSYQPAL EEMVLCNLERVH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17050		SPS2	solanesyl diphosphate synthase...		Potri.011G101301 [exp]	0	1
AT1G78510		SPS1	solanesyl diphosphate synthase...		Potri.011G099500 [exp]	1.00	0.9641
AT1G17050		SPS2	solanesyl diphosphate synthase...		Potri.011G101200 [exp]	2.44	0.8996
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Potri.012G022100 [exp]	2.82	0.8606
AT3G62200			Putative endonuclease or glyco...		Potri.013G003301 [exp]	13.41	0.8252
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Potri.018G029100 [exp]	23.23	0.8013
AT3G12650			unknown protein		Potri.001G269000 [exp]	24.00	0.8248
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.011G006050 [exp]	27.74	0.8236
					Potri.011G073291 [exp]	28.33	0.8085
AT2G22430	HD	ATHB6	homeobox protein 6 (.1)		Potri.005G071900 [exp]	28.61	0.8030
AT5G08139			RING/U-box superfamily protein...		Potri.015G047900 [exp]	37.22	0.7907

Compare expression of checked genes

Potri.011G101301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.