Plant FIBer expression Database

Potri.011G101800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G53520 282 / 4e-95 Chalcone-flavanone isomerase family protein (.1)
AT5G05270 61 / 6e-11 Chalcone-flavanone isomerase family protein (.1.2)
AT2G26310 56 / 1e-08 Chalcone-flavanone isomerase family protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G380700
[exp]
286 / 2e-97 AT1G53520 246 / 2e-81 Chalcone-flavanone isomerase family protein (.1)
Potri.019G057800
[exp]
74 / 1e-15 AT5G05270 270 / 6e-93 Chalcone-flavanone isomerase family protein (.1.2)
Potri.006G219600
[exp]
54 / 3e-08 AT2G26310 407 / 1e-140 Chalcone-flavanone isomerase family protein (.1.2.3)
Potri.018G048500
[exp]
51 / 4e-07 AT2G26310 389 / 3e-133 Chalcone-flavanone isomerase family protein (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026174
[exp]
251 / 2e-81 AT1G53520 259 / 3e-84 Chalcone-flavanone isomerase family protein (.1)
Lus10030529
[exp]
69 / 6e-14 AT5G05270 222 / 2e-74 Chalcone-flavanone isomerase family protein (.1.2)
Lus10012878
[exp]
70 / 7e-14 AT5G05270 230 / 1e-76 Chalcone-flavanone isomerase family protein (.1.2)
Lus10022046
[exp]
46 / 2e-05 AT3G63170 296 / 1e-100 Chalcone-flavanone isomerase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0560 Chalcone-like PF02431 Chalcone Chalcone-flavanone isomerase
Representative CDS sequence
>Potri.011G101800.1 pacid=42780248 polypeptide=Potri.011G101800.1.p locus=Potri.011G101800 ID=Potri.011G101800.1.v4.1 annot-version=v4.1
ATGGCAATGTCAATGTGTTCTACTCAGGCCTGGAATATCTTACATCATTTTCCACTCAAATCTCCAAACCATCCAGTTTCGTTACCATTCTATAAAACCC
ACTCTGATTTCTCACCCTTATCCACAATCCCTCACCTCAACAACAACTCAACTCCAACCCATCTCTCTTTCAAAGCCTCCTCGTCCTCCTCGTCCTCCTC
GTCCTCCTCCTTTTCAGTTGGGAGTGCAGAATACACAGAGGAAACAGCAACCAAGGAGAAATTTCAGAGATCGTTGAGTTTACCGGGTTGCTCTACCTCA
TTATCATTGCTTGGAACTGGATACAGGGAGAAGGTTTTTGCAATAATTGGTGTTAAGGTATATGCTGCAGGGCTATATGTCAATCCATCCATCTTAAGTA
CATTGAGCACTTGGAAAGGACAATCAGCCAGTGAGATTCAAGAGAATTCAGCTTTGTTTAGCTCGATTTTCCAAGCTCCCTTGGAAAAATCATTACAGAT
TGTTCTGGTGAGAGATATTGATGGTAAAACTTTCTGGGATGCCTTGGATGACGCCATATCCCCAAGAATCAAAACTGCCATTCCAGTTGACGAGTCTGCT
CTGTCCATATTCCGAAGCATCTTCCAAGGTCGAAGTCTTAAGAAAGGAACTTTGATATTTTTGACTTGGCTGAATCCCTCCAAGATGCTAGTTTGTGTCT
CATCTGATGGGATTCCCTCTAGTGTAGATGCTAGAATTGAGTCAGAAAATGTTACTTCTGCACTTTTTGACGTATTTTTCGGAGATGCTCCAGTTTCTCC
GTCCTTGAAAAACTCAGCAGCCAATGGCCTTGCAACTATCCTCAAGTGA
AA sequence
>Potri.011G101800.1 pacid=42780248 polypeptide=Potri.011G101800.1.p locus=Potri.011G101800 ID=Potri.011G101800.1.v4.1 annot-version=v4.1
MAMSMCSTQAWNILHHFPLKSPNHPVSLPFYKTHSDFSPLSTIPHLNNNSTPTHLSFKASSSSSSSSSSSFSVGSAEYTEETATKEKFQRSLSLPGCSTS
LSLLGTGYREKVFAIIGVKVYAAGLYVNPSILSTLSTWKGQSASEIQENSALFSSIFQAPLEKSLQIVLVRDIDGKTFWDALDDAISPRIKTAIPVDESA
LSIFRSIFQGRSLKKGTLIFLTWLNPSKMLVCVSSDGIPSSVDARIESENVTSALFDVFFGDAPVSPSLKNSAANGLATILK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G53520 Chalcone-flavanone isomerase f... Potri.011G101800
[exp]
0 1
AT3G26570 ORF02, PHT2;1 phosphate transporter 2;1 (.1.... Potri.010G046300
[exp]
4.24 0.9329
AT5G08400 Protein of unknown function (D... Potri.010G255300
[exp]
9.21 0.9193
AT3G48730 GSA2 glutamate-1-semialdehyde 2,1-a... Potri.015G101100
[exp]
13.11 0.9233 Pt-GSA1.1
AT5G58250 EMB3143 EMBRYO DEFECTIVE 3143, unknown... Potri.013G161000
[exp]
13.78 0.9326
AT5G08280 HEMC hydroxymethylbilane synthase (... Potri.007G072500
[exp]
15.65 0.9154
AT3G15360 ATHM4, ATM4, TR... ARABIDOPSIS THIOREDOXIN M-TYPE... Potri.011G120700
[exp]
16.43 0.8929 ATHM4.2
AT1G35680 RPL21C chloroplast ribosomal protein ... Potri.019G083400
[exp]
20.78 0.9270 Pt-RPL21.3
AT2G35450 catalytics;hydrolases (.1) Potri.003G167600
[exp]
21.00 0.9067
AT3G57190 PrfB3 peptide chain release factor 3... Potri.006G045200
[exp]
25.69 0.8990
AT5G63310 NDPK1A, NDPKIAI... NDP KINASE 1A, NUCLEOSIDE DIPH... Potri.012G093800
[exp]
28.56 0.9084

Potri.011G101800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.