Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78530 210 / 2e-68 Protein kinase superfamily protein (.1) AT1G31420 143 / 9e-41 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT2G35620 135 / 5e-38 FEI2 FEI 2, Leucine-rich repeat protein kinase family protein (.1.2) AT5G62710 127 / 5e-35 Leucine-rich repeat protein kinase family protein (.1) AT3G59110 122 / 3e-33 Protein kinase superfamily protein (.1) AT1G09440 119 / 2e-32 Protein kinase superfamily protein (.1) AT1G56720 119 / 2e-32 Protein kinase superfamily protein (.1.2.3) AT3G09010 115 / 3e-31 Protein kinase superfamily protein (.1) AT1G01540 115 / 4e-31 Protein kinase superfamily protein (.1.2) AT4G02010 116 / 6e-31 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G380800 [exp] 255 / 6e-86 AT1G78530 535 / 0.0 Protein kinase superfamily protein (.1) Potri.001G129000 [exp] 130 / 3e-36 AT1G31420 928 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.012G071100 [exp] 128 / 2e-35 AT5G62710 943 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G105000 [exp] 127 / 5e-35 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.005G003300 [exp] 121 / 4e-33 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G001600 [exp] 121 / 4e-33 AT5G18500 635 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G472900 [exp] 120 / 2e-32 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.013G003700 [exp] 119 / 3e-32 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G203300 [exp] 119 / 3e-32 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005569 [exp] 206 / 3e-67 AT1G78530 462 / 2e-164 Protein kinase superfamily protein (.1) Lus10034753 [exp] 134 / 2e-37 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Lus10033104 [exp] 130 / 4e-36 AT5G62710 934 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036672 [exp] 128 / 3e-35 AT5G62710 936 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10020747 [exp] 123 / 7e-34 AT3G59110 737 / 0.0 Protein kinase superfamily protein (.1) Lus10006215 [exp] 122 / 2e-33 AT1G56720 599 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10029788 [exp] 121 / 5e-33 AT3G59110 734 / 0.0 Protein kinase superfamily protein (.1) Lus10038087 [exp] 119 / 1e-32 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1) Lus10025358 [exp] 116 / 2e-32 AT4G33430 500 / 2e-176 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10006643 [exp] 118 / 3e-32 AT5G15080 495 / 2e-173 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.011G101900.1 pacid=42781618 polypeptide=Potri.011G101900.1.p locus=Potri.011G101900 ID=Potri.011G101900.1.v4.1 annot-version=v4.1 ATGGAAGCTCGAGTTTCTGATCTCGGATTGGCCACATTGATGGAACCTAATAAGACTCATGTTTCAACATTAGTAGCGGGAACTTCTGGATACTTGGCTC CTGAGTACTTTGAAACAGGGAAAGTGACCGTGAAAGTGGATGTATACAGCTTTGGAGTTGTCCTGCTCGAACTTCTAACTGGAATGAAGCCAACAGATGA AGAATTTTTCGAGGAAGGAACCAAGCTTGTAACATGGGTGAAGGCAATTGTTGAAGATAAAAGGGAAGAGTATGTCCTTGACAGTAGCTTAAAGTGCAGT CCCACTGAAGAGATAAATAAAGTATTCAGAATAGCATTCATGTGCCTTGAACCAGAGCCCTCCAAGAGACCTACCATGGATGAGATTGTCAAGATGCTTG AGCGAGCTAAATCGGAGAGGGTTGTGTAA
AA sequence Show only first row Show all	>Potri.011G101900.1 pacid=42781618 polypeptide=Potri.011G101900.1.p locus=Potri.011G101900 ID=Potri.011G101900.1.v4.1 annot-version=v4.1 MEARVSDLGLATLMEPNKTHVSTLVAGTSGYLAPEYFETGKVTVKVDVYSFGVVLLELLTGMKPTDEEFFEEGTKLVTWVKAIVEDKREEYVLDSSLKCS PTEEINKVFRIAFMCLEPEPSKRPTMDEIVKMLERAKSERVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78530			Protein kinase superfamily pro...		Potri.011G101900 [exp]	0	1
AT5G02920			F-box/RNI-like superfamily pro...		Potri.017G146500 [exp]	7.87	0.9033
					Potri.001G343300 [exp]	11.00	0.8171
AT4G27640			ARM repeat superfamily protein...		Potri.010G169800 [exp]	11.61	0.8082
AT4G19550			zinc ion binding;transcription...		Potri.001G082800 [exp]	13.92	0.8305
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Potri.012G109100 [exp]	18.43	0.7833
AT4G18230			unknown protein		Potri.002G170700 [exp]	20.42	0.8931
AT1G69680			Mog1/PsbP/DUF1795-like photosy...		Potri.013G049900 [exp]	22.27	0.8927
AT2G38480			Uncharacterised protein family...		Potri.016G128200 [exp]	27.49	0.8236
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.001G294000 [exp]	28.54	0.7890
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Potri.001G335800 [exp]	29.49	0.8712	GAPDH.2

Compare expression of checked genes

Potri.011G101900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.