Plant FIBer expression Database

Potri.011G102100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78540 591 / 0 STATLB, ATSHB STAT-TYPE LINKER-SH2 DOMAIN FACTOR B, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN B, SH2 domain protein B (.1.2)
AT1G17040 575 / 0 STATLA, ATSHA STAT-TYPE LINKER-SH2 DOMAIN FACTOR A, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN A, SH2 domain protein A (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G380900
[exp]
1201 / 0 AT1G78540 592 / 0.0 STAT-TYPE LINKER-SH2 DOMAIN FACTOR B, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN B, SH2 domain protein B (.1.2)
Potri.008G139800
[exp]
54 / 2e-09 AT1G78540 51 / 4e-09 STAT-TYPE LINKER-SH2 DOMAIN FACTOR B, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN B, SH2 domain protein B (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013716
[exp]
783 / 0 AT1G78540 622 / 0.0 STAT-TYPE LINKER-SH2 DOMAIN FACTOR B, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN B, SH2 domain protein B (.1.2)
Lus10005584
[exp]
777 / 0 AT1G78540 605 / 0.0 STAT-TYPE LINKER-SH2 DOMAIN FACTOR B, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN B, SH2 domain protein B (.1.2)
PFAM info
Representative CDS sequence
>Potri.011G102100.1 pacid=42780871 polypeptide=Potri.011G102100.1.p locus=Potri.011G102100 ID=Potri.011G102100.1.v4.1 annot-version=v4.1
ATGGGTAGTCGTAATAATAATAATGTGATAAACAGAAAAGATTACATTTTTCTGAAAGATTTCAGAATGGAAATCGAAGTTGAAAACGAAAAAGATTTAT
CTCTCTCTTTCTGGGTTTATCTTATTGACTCCTCCACCACAACATTTCCTGCGACAATCATCAAACAGGTTTACCCGGATATTACTAGCTGTGCTCCTTT
TCTTGTTCTGAATGAGAAGATAATCACGCTTTTTCCACTTCTCCATGCACACAAAAAAACTACAAATTCTAGTAATTCTACATCAATGGAGATTAAATGT
CCTCTGGAAAACTGGATTCATGTTGGATTTGAGGTTCTTACTGATATTTTTCGGCTTCACATTAATGGGGAGATTGTAAGCGAGCAGCCTCAGTCATCCT
CCCTTGACAAAAACTGGAATTCCAATGGACTGAGGAAGATAGCATTAGTTGGTTCTTGTGCAGATGATGGCCTGCAGGGTTATGTTTACCATGCAGAAGT
CTTGCCTTTAAGCTTGTCCATTAAGGATCACTATGTTAAGGATCCACCTCCGTGGTTATCAATTGATCTCTCGTCCACCTCTGAAATTGATGAAGACAAT
GATGGCATCTGGAATATTGTTGGAGGCAAGGCTTCATGTCGTAGGATTTTTTCCTTGGATGTGGTTTTATTAAATGCAATGAGCCAGGCTATAAACAAGG
AATTGGAGATTGTTGCTTCACTGGTATATGCGGACAATGGGCTTCCTGTGGAGAAGACATCTGATGATGAAGATCCCCTTTTGACAAGCTGCGATGGGAT
TGAATTTTTTAATTATGATAGACAAGGAAAACTATTGCATGGGCGTGCATCTTTGAAGCTCAAAATATCTCAGCTTTCATCCAAGTGTGATAATAGGCTT
TTCCGCATTAAATTAGAAATCCCAAAATTCAGTGGTTATCATTTCCTGGAGGCATTTTCCCATCCAATCCGTTGCATCTCTCGAAGTCGTAATCCCCGGA
CATCTCTGACATGGAAAAGGCCAACCTCTGTTGCTGAACCTTTCAACAAATCTCAATCATTTGGACTATATAATGGATCTATAGAATTGCAGCACAACTC
CATCCATGAGATAAGACCTAGTCCATCATCAAAACGGATCAAACTTGGGCAAGAAAAGACATCTACCATGGAGAAGCCAGATGTGGAATGCTACTCTGAT
GCTTGGACAACTAATCAGGTTGAGAATGCACCACGGATACCATTAGATAGGGGAGCAGAGAATGTTGAAGAAGCAGACAATTCACCATCTGTGTCAGACA
GTATCGAAGAAAGGTTATCGGATTTCAATATCACATCAAGCAGTAGCTATTTGATATCAGATGTGACCATTTTTAAATACTGCCTGGGAGGATTGACAGA
TAGGGCTCTTCTGCTGAAGGAGGTTGCAACCTCTGCCTCTGAAGAAGAGCTTTTTAGGCTTGCAAATGAGGTGTCTCTGTACTCAGGATGTTCACACCAC
AGACGACAGATAGTGATAGCAAAGAGGTTGATAGAGGAAGGAACCAAAGTTTGGAATTCAATCTCACAAAACAACCGCCTCATTCATTGGGAGAATGTGA
TTTTTGAGATTGAAGAGCAATTCATGAGGATTACTTGCTCCAGTACTAGATCCCTCACAGAAAAGGATTTTGAGCTCCTGAGGAGAATTGCTGGATGCCG
GGAATATATGGCCCAAGAAAATTTTGAGAAGATATGGCGTTGGTTGTATCCTGTTGCTTTTACATTAGCAAGCGATCCAATAAATACAATATGGAATTCT
ACTTCGCCAAAGTGGATAGAAGGATTTATCACAAAGGAAGAAGCAGAACTGTCACTTCAGGGTCCGAGGGGCCTTCAAGAGCCTGGAACATTTGTTCTGC
GGTTTCCTACTTCAAGGAGCTGGCCCCATCCTGATGCAGGTAGCTTAATTGTGACTTACGTTGGCAGTGATTACACTGTTCACCACAGGTTGCTTTCCCT
TGATTATATCTACAGTTGTGAGGAAAGGGAGATGAATTTGAAATCACTGGAACATATGCTGTTGGCAGAGCCTGAGCTCTCTCGGTTAGGAAGGATAGTA
AGACAGAGTCAATTAACTTGA
AA sequence
>Potri.011G102100.1 pacid=42780871 polypeptide=Potri.011G102100.1.p locus=Potri.011G102100 ID=Potri.011G102100.1.v4.1 annot-version=v4.1
MGSRNNNNVINRKDYIFLKDFRMEIEVENEKDLSLSFWVYLIDSSTTTFPATIIKQVYPDITSCAPFLVLNEKIITLFPLLHAHKKTTNSSNSTSMEIKC
PLENWIHVGFEVLTDIFRLHINGEIVSEQPQSSSLDKNWNSNGLRKIALVGSCADDGLQGYVYHAEVLPLSLSIKDHYVKDPPPWLSIDLSSTSEIDEDN
DGIWNIVGGKASCRRIFSLDVVLLNAMSQAINKELEIVASLVYADNGLPVEKTSDDEDPLLTSCDGIEFFNYDRQGKLLHGRASLKLKISQLSSKCDNRL
FRIKLEIPKFSGYHFLEAFSHPIRCISRSRNPRTSLTWKRPTSVAEPFNKSQSFGLYNGSIELQHNSIHEIRPSPSSKRIKLGQEKTSTMEKPDVECYSD
AWTTNQVENAPRIPLDRGAENVEEADNSPSVSDSIEERLSDFNITSSSSYLISDVTIFKYCLGGLTDRALLLKEVATSASEEELFRLANEVSLYSGCSHH
RRQIVIAKRLIEEGTKVWNSISQNNRLIHWENVIFEIEEQFMRITCSSTRSLTEKDFELLRRIAGCREYMAQENFEKIWRWLYPVAFTLASDPINTIWNS
TSPKWIEGFITKEEAELSLQGPRGLQEPGTFVLRFPTSRSWPHPDAGSLIVTYVGSDYTVHHRLLSLDYIYSCEEREMNLKSLEHMLLAEPELSRLGRIV
RQSQLT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G78540 STATLB, ATSHB STAT-TYPE LINKER-SH2 DOMAIN FA... Potri.011G102100
[exp]
0 1
AT4G13870 WRNEXO, ATWRNEX... Werner syndrome-like exonuclea... Potri.017G059200
[exp]
1.00 0.8634
AT1G32260 unknown protein Potri.001G138200
[exp]
3.00 0.8322
AT2G01480 O-fucosyltransferase family pr... Potri.008G130600
[exp]
4.00 0.8267
AT2G27460 sec23/sec24 transport family p... Potri.004G201800
[exp]
5.00 0.8262
AT1G55900 TIM50, EMB1860 embryo defective 1860, Haloaci... Potri.011G093000
[exp]
5.91 0.7880 TIM50.1
AT1G33420 RING/FYVE/PHD zinc finger supe... Potri.013G092000
[exp]
8.48 0.8460
AT4G19210 ABCE2, ATRLI2 ARABIDOPSIS THALIANA RNASE L I... Potri.004G235900
[exp]
12.40 0.7703 Pt-ATRLI1.1
AT5G40250 RING/U-box superfamily protein... Potri.001G351466
[exp]
22.13 0.7715
AT1G76770 HSP20-like chaperones superfam... Potri.002G067700
[exp]
27.92 0.8003
AT5G62960 unknown protein Potri.015G078200
[exp]
42.21 0.7210

Potri.011G102100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.