Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TDY1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14720 874 / 0 ATMPK19 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) AT1G53510 853 / 0 ATMPK18 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) AT2G42880 783 / 0 ATMPK20 MAP kinase 20 (.1) AT5G19010 709 / 0 ATMPK16 mitogen-activated protein kinase 16 (.1) AT1G73670 676 / 0 ATMPK15 MAP kinase 15 (.1) AT3G18040 666 / 0 ATMPK9 MAP kinase 9 (.1.2) AT1G18150 650 / 0 ATMPK8 Protein kinase superfamily protein (.1.2.3) AT2G01450 633 / 0 ATMPK17 MAP kinase 17 (.1.2.3.4) AT4G01370 357 / 9e-119 ATMPK4 MAP kinase 4 (.1) AT4G11330 348 / 2e-115 ATMPK5 MAP kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G381300 [exp] 1100 / 0 AT3G14720 875 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) Potri.002G059900 [exp] 888 / 0 AT2G42880 897 / 0.0 MAP kinase 20 (.1) Potri.005G201800 [exp] 870 / 0 AT2G42880 904 / 0.0 MAP kinase 20 (.1) Potri.010G029700 [exp] 733 / 0 AT5G19010 921 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.008G200800 [exp] 732 / 0 AT5G19010 922 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.012G048600 [exp] 676 / 0 AT3G18040 793 / 0.0 MAP kinase 9 (.1.2) Potri.015G040300 [exp] 673 / 0 AT3G18040 767 / 0.0 MAP kinase 9 (.1.2) Potri.010G112200 [exp] 659 / 0 AT1G73670 687 / 0.0 MAP kinase 15 (.1) Potri.008G130000 [exp] 657 / 0 AT1G73670 697 / 0.0 MAP kinase 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013702 [exp] 937 / 0 AT1G53510 845 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10005568 [exp] 936 / 0 AT1G53510 853 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10041234 [exp] 702 / 0 AT5G19010 911 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10021945 [exp] 697 / 0 AT5G19010 912 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10038956 [exp] 667 / 0 AT3G18040 817 / 0.0 MAP kinase 9 (.1.2) Lus10021784 [exp] 654 / 0 AT1G73670 706 / 0.0 MAP kinase 15 (.1) Lus10027248 [exp] 627 / 0 AT3G18040 741 / 0.0 MAP kinase 9 (.1.2) Lus10034601 [exp] 560 / 0 AT1G73670 597 / 0.0 MAP kinase 15 (.1) Lus10027091 [exp] 355 / 2e-117 AT2G43790 692 / 0.0 MAP kinase 6 (.1) Lus10008339 [exp] 355 / 2e-117 AT2G43790 691 / 0.0 MAP kinase 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G102500.1 pacid=42782353 polypeptide=Potri.011G102500.1.p locus=Potri.011G102500 ID=Potri.011G102500.1.v4.1 annot-version=v4.1 ATGGAATTTTTCACTGAGTATGGGGATGCCAATAGATACAAGATTCTAGAAGTTATTGGAAAGGGAAGCTATGGAGTTGTTTGTGCTGCAATTGACACTC ATACTGGAGAAAAAGTGGCAATAAAGAAAATCAATAATGTTTTTGAGCATATTTCTGATGCTTTTCGAATCTTGAGAGAAGTAAAGTTACTTAGGCTTTT ACGGCATCCTGATATCGTTGAGATTAAGAGAATCATGCTGCCACCCTCAAAGAGAGAATTCAAAGACATATTTGTTGTTTTTGAGCTTATGGAATCTGAT CTTCACCAAGTCATCAAAGCTAATGATGACTTGACAAGGGAACACCATCAGTTCTTTCTTTATCAGATGTTACGTGCACTGAAATATATGCATACAGCAA ATATGTACCACAGAGATCTTAAACCAAAGAATATTTTGGCAAATGCAAATTGCAAACTTAAAGTATGTGACTTTGGTCTGGCAAGAGTAGCATTTAGTGA TACACCAACCACTGTTTTCTGGACGGACTATGTTGCTACAAGATGGTATAGAGCTCCAGAGCTGTGTGGATCTTTCTTTTCAAAGTATACACGAGCAATT GATATTTGGAGCATTGGCTGCATCTTTGCTGAGGTACTGACAGGGAAGCCACTGTTTCCGGGTAAAAGCGTTGTTCATCAATTAGATTTGATCACTGATC TTCTTGGGACTCCTTCATTAGAAACCATTTCTAGAGTCCGAAATGACAAGGCAAGAAAATACTTGACAGAAATGAGGAAAAAACAGCCTGTGCCATTTGC ACAGAAATTTCCAAATGCAGATCCTTCGGCACACAGGCTACTGCAAAGGCTTCTAGCATTCGATCCAAAAGATCGACCAACTGCTGAAGAGGCATTAGCT GACCCTTACTTTAAGGGCCTAGCCAAAGTTGAGAGAGAACCTTCCTGTCAGCCAATCACGAAGTTGGAGTTTGAGTTTGAAAGGCGAAGGGTAACAAAGG AAGATGTTCGGGAACTGCTATACCGGGAAATACTGGAATACCATCCACAGCTGCTCAAAGACTACATGAATGGAAATGAAAGCACTAATTTTCTCTATCC TAGTGCCATAGGTCATTTTAGAAAGCAGTTTGCATATCTCGAGGAAAACAGTGGTAGAAGTGCACCAGTGATACCTCTAGAGAGGAAGCATGTCTCTCTT CCACGGTCTACTGTTCACTCAAACACAATGCCTCCTAATATGCAATCAAATTCAACCTCATTTGACAACAGGCAAGTTACAGAAGATGCTTCTAAAAATT TAAGAGTACAGGATACAAGTTTTGAAAATCCAGCAAAGGTCGCAAGGCCCCCACCTCGAATGCCATCAGCAAAGCCAGGGAGAGTTGTGGGATCAGTTGT ACCGTATGAGAATGGCAGAAATGTCAAAGATCTCTATGATACAAGGATGTTTTGTAGAAATGCTGTTCTTCCTCCCCAAACCAGCTCTCCACACTGCTTC TTGAGGACTAACACATTGATACAAGAGAAGTCTATCTCGGAGACTGGAAAAGATTCACAAACCAAACAGCAACCTCCTAAATGTAATGTGGCGGCCAAGC CATCCTCTGGGATGGCCATGGATGTGAACACCAACCCATATTACCAACCACAATCTAGGGTAGAGCAGTTAAATGAAAGAATTGCCATTGATGCAAAACT GCTCCAGGCACAATCCCAGTTTGGTCCGGTTGGTCGTGCTGCTGTAGCTGCTCATAGGAACGTGGGCACTGTTCATTATGGATTAACATAG
AA sequence Show only first row Show all	>Potri.011G102500.1 pacid=42782353 polypeptide=Potri.011G102500.1.p locus=Potri.011G102500 ID=Potri.011G102500.1.v4.1 annot-version=v4.1 MEFFTEYGDANRYKILEVIGKGSYGVVCAAIDTHTGEKVAIKKINNVFEHISDAFRILREVKLLRLLRHPDIVEIKRIMLPPSKREFKDIFVVFELMESD LHQVIKANDDLTREHHQFFLYQMLRALKYMHTANMYHRDLKPKNILANANCKLKVCDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFFSKYTRAI DIWSIGCIFAEVLTGKPLFPGKSVVHQLDLITDLLGTPSLETISRVRNDKARKYLTEMRKKQPVPFAQKFPNADPSAHRLLQRLLAFDPKDRPTAEEALA DPYFKGLAKVEREPSCQPITKLEFEFERRRVTKEDVRELLYREILEYHPQLLKDYMNGNESTNFLYPSAIGHFRKQFAYLEENSGRSAPVIPLERKHVSL PRSTVHSNTMPPNMQSNSTSFDNRQVTEDASKNLRVQDTSFENPAKVARPPPRMPSAKPGRVVGSVVPYENGRNVKDLYDTRMFCRNAVLPPQTSSPHCF LRTNTLIQEKSISETGKDSQTKQQPPKCNVAAKPSSGMAMDVNTNPYYQPQSRVEQLNERIAIDAKLLQAQSQFGPVGRAAVAAHRNVGTVHYGLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14720		ATMPK19	ARABIDOPSIS THALIANA MAP KINAS...		Potri.011G102500 [exp]	0	1	Pt-TDY1.1
					Potri.001G410554 [exp]	2.44	0.9003
					Potri.019G133300 [exp]	4.47	0.8090
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.012G132400 [exp]	5.74	0.8648	Pt-GA20.1,GA20ox6
AT3G48660			Protein of unknown function (D...		Potri.015G098300 [exp]	6.32	0.8382
AT5G09400		KUP7	K+ uptake permease 7, K+ uptak...		Potri.001G205500 [exp]	6.92	0.7988	KUP7.1
					Potri.019G005913 [exp]	7.48	0.8578
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Potri.001G019100 [exp]	8.48	0.7790
AT5G62065			Bifunctional inhibitor/lipid-t...		Potri.015G142100 [exp]	8.94	0.8456
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Potri.001G082400 [exp]	9.16	0.8249
AT4G32810		MAX4, CCD8, ATC...	MORE AXILLARY BRANCHING 4, car...		Potri.018G044100 [exp]	10.09	0.8547

Compare expression of checked genes

Potri.011G102500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.