Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 811 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 766 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 749 / 0 EFR EF-TU receptor (.1) AT3G47110 746 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 733 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 464 / 2e-147 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 432 / 1e-133 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 412 / 9e-127 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 405 / 6e-124 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 400 / 5e-123 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G103000 [exp] 1231 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 1230 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 1215 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 1009 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 962 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 962 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 957 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 956 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 953 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030903 [exp] 981 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 944 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 942 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 935 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037840 [exp] 932 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038686 [exp] 932 / 0 AT3G47570 752 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 923 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 919 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 914 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011388 [exp] 912 / 0 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.011G102700.1 pacid=42781854 polypeptide=Potri.011G102700.1.p locus=Potri.011G102700 ID=Potri.011G102700.1.v4.1 annot-version=v4.1 ATGTTTTGTTCAGCCTTTTGCTTCCGATCCTTTGTTTTTCTTTTATCTTTAATCTCAGTCACCTGCTCCGACTACACTAATGAGACTGACTTATTAGCCT TAATCCAATTCAAGAACAAAATAGTGGATGACCCTCTTGGGATCATGAGCTCGTGGAATAGTACTATCCATTTCTGCCAGTGGCATGGTGTCTCTTGTGG TCGTAGGCACCAAAGGGTCAGAGTGTTAGCCCTACAGTCCCTCAAACTTTCAGGTACCATATCACCCCATATTGGCAATCTGAGCTTTTTAAGGGAACTA CACCTTCAAAACAATAGTTTCTTTCATGAAATCCCTCCACAGGTTGGCCGTTTGCGTAGTTTGCAGATATTTTCTCTACACAATAATTCCATCTCTGGTC AAATTCCTCCTAGCATATCTGATTGCTCTAACCTTATTTCAATTAAAATTGAATTCAACAATCTGACAGGAGAAATTCCTATGGAGCTAGGCTCTTTGTT GAAGCTCAAAAACCTTACTCTGGAAGTCAATGGTCTTACAGGGACTATCCCTCCTTCTTTAGGGAATCTATCCTCCCTTGAGATCCTTCGGCTAGAAAAA AATAAAATTCTGTTTGGGAATGTTCCTAGTACTCTAGGAAAATTGAAGAATCTTAGGATTTTAAATCTGATGGATAACAGGCTTTCAGGTGTCATTCCAC CCTCAATCTTCAATCTTTCTTCATTGACAGCTTTGGATATAGGATTCAACCTTTTCCATGGCAATCTTCCATCTGATATAGGCATATCTCTCCCAAATCT TGAATTCTTTTCAATCGCCTCAAACCAGTTCACTGGTTCCATTCCTGTTTCCATATCAAATGCTTCAAATATTGAATTGCTTCAAGTAAGTTTAAATAAT CTAACAGGAGAAGTTCCTACATTAGAAAAGCTGCATAGGCTCAACTTTTTCACCCTTTTCTCCAACCATTTAGGAAGTGGACAAGCTAATGACTTAAGCT TTCTCTCCTCATTGACCAATGCCACCACTTTAGAGTATTTGTCTATTAAACGAAATAACTTTGGCGGGGAGTTGCCGAAACAAATCAGCAATCTCTCAAC CATGCTCGGGGTGATCAGTCTACCGGAAAATAACATACTTGGAAGCATCCCAGCTGGAATAGAGAAGCTGGTGAACTTGAAAGTTTTTGATGTTGGCAAC AACAAAATCTCAGGTATTATTCCTTCTAGCATTGGAGAGCTTCAAAATCTTGAGGGATTGGTTCTTGACTACAACAATTTATCAGGGCGTATTCCATCCT CTGTAGGGAATCTGACCAAATTAATGGCTCTCTATTTAGGGGATAACAGTCTTGAAGGTAGCATCCCCTCAAGTCTAGGGAACTGCAAGAAATTGTTAGT GTTGACTCTGTGTGGAAACAATCTTAGTGGTGACATACCCCCAGGACTTTTTGGGATCTTCTCATTACTGTATATCTGTTTTTCTAAAAACCATTTTTCG GGTTCCCTTCCCATTGAAATAGGAAAGTTAATAAATCTAGAATTCTTAGATGTATCTGGAAACATGTTATCAGGTGAGATTCCTAGCAGTCTTGGGGGTT GTATAAGTCTTGAAGACTTGTATATGAATTCCAACTTCTTTCATGGGTCCATTCCTTCAGCATTGAGTTCACTGAGAGGAGTTCTACAGTTCAACTTTTC TCATAACAACTTGTCAGGGAAAATTCCAGAGTTTTTTCAGGGCTTTAACTCATTAGAGATGTTGGATCTCTCTTATAACAACTTCGAGGGCATGATACCA GATGAAGGAATTTTCAAGAACTCAACTGCAGTTTCAGTCATAGGAAATAGCCAGCTATGTGGTGGTAACACCGAGTTGGGGCTGCCTAGATGCAAGGTCC ACCAACCAAAGAGGCTGAAACTCAAATTGAAGATAGCAATCTTTGCCATTACAGTGCTTCTAGCATTGGCCCTTGTTGTCACTTGTTTATTTCTTTGTTC ATCAAGAAGGAAAAGAAGAGAAATTAAATTGAGCTCTATGCGGAATGAGCTATTGGAGGTGTCTTATCAAATTCTCTTAAAAGCTACCAATGGATTCTCT TCAGCGAATTTGGTTGGTATAGGTAGCTTTGGGTCTGTGTATAAAGGAATGCTTGACCAAAATGGAATGGTCATTGCTGTCAAAGTGCTTAATCTCATGC GTCAAGGAGCTTCTAGGAGTTTCATAGCTGAATGTGAAGCCCTGAGAAACATCAGACATCGGAATCTTGTCAAGGTATTAACTGCATGCTCAAGTATTGA TTACCATGGTAATGATTTCAAGGCTATAGTTTATGAGTTCATGGCTAATGGGAGTCTAGAGGATTGGCTGCATCCAACTGGTACAGGAGGTGGCACAGCG CTGACTCTAAATCTTCTCCAGAGACTTAACATTGCCATCGATGTTGCGTGTGCACTAGAGTACCTTCATCATCATTGTGAAATGCCAATAGCTCACTGTG ATCTTAAACCAAGCAATGTTCTTCTCGATGATGAACTCACTGGACATGTAGGTGACTTTGGGCTAGCAAAATTTCTTTCTGGAGCAAGCCTTGACAATCC AACAAATGAATCAACTTCAATTGGAGTAAGAGGAACTATAGGTTACGCTCCTCCAGAGTATGGCGTAGGAGGTGAAGTGTCTGCATATGGTGATACATAT AGCTATGGCATACTCTTGTTGGAGATGTTCACAGGAAAGAGGCCCACTGATGAAATGTTTAGAGAAGGCTCAAATCTTCATAACTTTGTCAAGAGAGCTG TGCCTGAACAAGTGAAACAGATAACAGATCCAACTCTTCTTCAGGAAGAACCAACTGGGGACGACGACAAACGTGAAATTAGCAGCATGAGAAACAGCAG ACCTCTCGAGTGCTTGAACTCAATATTACGAATTGGAATCTCATGTTCTGTTGAATTTCCAAGAGAGCGCATGAAGATTAGCGACGCCGTTGCTCAACTC CATTCTGTCCGAAATGAACTTCAATCAACTGGTGGTAAGCAAGGATGA
AA sequence Show only first row Show all	>Potri.011G102700.1 pacid=42781854 polypeptide=Potri.011G102700.1.p locus=Potri.011G102700 ID=Potri.011G102700.1.v4.1 annot-version=v4.1 MFCSAFCFRSFVFLLSLISVTCSDYTNETDLLALIQFKNKIVDDPLGIMSSWNSTIHFCQWHGVSCGRRHQRVRVLALQSLKLSGTISPHIGNLSFLREL HLQNNSFFHEIPPQVGRLRSLQIFSLHNNSISGQIPPSISDCSNLISIKIEFNNLTGEIPMELGSLLKLKNLTLEVNGLTGTIPPSLGNLSSLEILRLEK NKILFGNVPSTLGKLKNLRILNLMDNRLSGVIPPSIFNLSSLTALDIGFNLFHGNLPSDIGISLPNLEFFSIASNQFTGSIPVSISNASNIELLQVSLNN LTGEVPTLEKLHRLNFFTLFSNHLGSGQANDLSFLSSLTNATTLEYLSIKRNNFGGELPKQISNLSTMLGVISLPENNILGSIPAGIEKLVNLKVFDVGN NKISGIIPSSIGELQNLEGLVLDYNNLSGRIPSSVGNLTKLMALYLGDNSLEGSIPSSLGNCKKLLVLTLCGNNLSGDIPPGLFGIFSLLYICFSKNHFS GSLPIEIGKLINLEFLDVSGNMLSGEIPSSLGGCISLEDLYMNSNFFHGSIPSALSSLRGVLQFNFSHNNLSGKIPEFFQGFNSLEMLDLSYNNFEGMIP DEGIFKNSTAVSVIGNSQLCGGNTELGLPRCKVHQPKRLKLKLKIAIFAITVLLALALVVTCLFLCSSRRKRREIKLSSMRNELLEVSYQILLKATNGFS SANLVGIGSFGSVYKGMLDQNGMVIAVKVLNLMRQGASRSFIAECEALRNIRHRNLVKVLTACSSIDYHGNDFKAIVYEFMANGSLEDWLHPTGTGGGTA LTLNLLQRLNIAIDVACALEYLHHHCEMPIAHCDLKPSNVLLDDELTGHVGDFGLAKFLSGASLDNPTNESTSIGVRGTIGYAPPEYGVGGEVSAYGDTY SYGILLLEMFTGKRPTDEMFREGSNLHNFVKRAVPEQVKQITDPTLLQEEPTGDDDKREISSMRNSRPLECLNSILRIGISCSVEFPRERMKISDAVAQL HSVRNELQSTGGKQG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.011G102700 [exp]	0	1
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.007G040200 [exp]	2.00	0.9720
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Potri.015G020000 [exp]	3.87	0.9661	NAC021
AT5G51160			Ankyrin repeat family protein ...		Potri.012G113800 [exp]	5.29	0.9624
AT1G52780			Protein of unknown function (D...		Potri.006G187000 [exp]	5.47	0.9619
AT5G06490			RING/U-box superfamily protein...		Potri.010G243200 [exp]	7.93	0.9590
AT5G50200		WR3, ATNRT3.1, ...	WOUND-RESPONSIVE 3, NITRATE TR...		Potri.015G085000 [exp]	7.93	0.9388	WR3.3
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134300 [exp]	9.94	0.9574
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.016G074000 [exp]	10.09	0.9616
AT2G31090			unknown protein		Potri.011G063900 [exp]	10.24	0.9508
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.005G029200 [exp]	12.32	0.9582

Compare expression of checked genes

Potri.011G102700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.