Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 865 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 798 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 778 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 761 / 0 EFR EF-TU receptor (.1) AT3G47110 759 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 483 / 1e-154 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 469 / 1e-147 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 457 / 2e-143 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 451 / 9e-140 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G65700 436 / 8e-137 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G103000 [exp] 1836 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 1825 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 1265 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 1066 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 990 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 983 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 980 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 967 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 949 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004388 [exp] 995 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 983 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037840 [exp] 961 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 955 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 954 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 951 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038686 [exp] 946 / 0 AT3G47570 752 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 942 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030856 [exp] 924 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 922 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.011G102800.1 pacid=42780838 polypeptide=Potri.011G102800.1.p locus=Potri.011G102800 ID=Potri.011G102800.1.v4.1 annot-version=v4.1 ATGGGTTTTTTAGTGCCTTCTCCAGTCTTCTGCCCCCGTGCCATTGTTCTTCTTCTCTTGTGTCTCACGTCCTCTGCCTTGTCAATCGACAGGAATGAGA CCGACCGACTAGCCTTGCTGGATTTCAAGTCCAAAATGACCCGTGATCCTCTTGGAATCATGCGCTTGTGGAATAGCAGCATCCACTTCTGCCAGTGGTT CGGTGTCACATGCAGTCAGAAGCACCAAAGGGTGACGGTGCTGGATCTGCGGTCCCTTAAACTCTCAGGTTCCGTATCACCATATATTGGCAATCTGAGC TTTTTAAGAGAGATATACCTTCAAAACAATAGCTTCAGTCATGAAATCCCAGCGCAAATTGGCCACTTGCATAGATTGCAAATACTATTACTGCATAATA ATTTTCTTACTGGTGAAATTCCTGCTAGTATATCTAGTTCCTATAACCTCGTTTCACTCAAATTAGCAAACAACAAGCTGATAGGAGAAATTCCAAAGGA GTTTGGCTCCTTCTTGAAGCTCAGAAACCTCTCTCTAGCAGGCAACAACCTTACAGGAACTATCCCTCCATCTTTAGGGAACATATCATCCCTCCAGACA CTATGGCTAAATGATAATAAGTTGTTTGGGAATCTCCCTGCTACTTTAAGCAAATTGGTAAACCTCAGGATTTTGTCATTGTTTAATAATAGATTTTCAG GTACCATACCTCCCTCCATGTTCAATCTCTCTTCATTAACGGCTTTTGAAGTAGGGCTTAACCATTTCCACGGCAATCTCCCCCCTGATCTGGGCATTTC CCTTCCAAATCTTGAATTCTTTTCCATCCATTCTAACCAATTCACTGGAAGTGTTCCTGTTTCAATATCCAATTTATCAAATCTTGAAATGCTACAGTTA AACCAAAACAAGCTTACAGGAAAAATGCCTTCACTGGAAAAGCTACAAAGGCTTCTTTCAATAACCATTGCCTCTAACAATCTGGGAAGTGGGGATGCCA ATGACTTGAGCTTTCTCTCCTCCTTGACCAATGCCACAAACCTAGAGGAATTGATTATAACGCAAAATAACTTTCAAGGACAGCTGCCTCCACAAATCAG CAATCTGTCAACTACACTGGAAATCATGGGCCTAGACAGCAATCTATTATTTGGGAGCATCCCTGATGGAATAGAGAATCTCATCAGCTTGAATGATTTT GAAGTACAAAACAACCACCTTTCAGGTATCATTCCTTCTACCATTGGGAAGCTTCAAAATCTAGAAATATTGGATCTTGGATTGAATAATTTTTCAGGGC ATATTCCATCCTCTCTAGGAAACCTGACAAACTTAATTGGACTCTATTTAAATGACATTAATGTTCAAGGCAGCATCCCTTCAAGTCTAGCAAATTGCAA CAATTTGTTAGAGTTGGATCTTTCTGGAAACTATATAAGCGGAAGCATACCCCCTGAAATATTTGTACTATCCTCTCTGTCAATTAATCTTGATTTATCA CGAAACCATTTGTCTGGCTCCCTACCAAAGGAAGTAGGAAATTTGGAAAATCTAGGAATTTTTGCTATTTCTGGGAATATGATATCAGGTACGATTCCTA GTAGTCTTGGACATTGTACAAGTCTGCAAGTCTTGTACTTGGATGCCAACTTTTTTGAAGGTTCCATTCCTTCCTCCTTGAGTACCCTGAGAGGCATTCA AGAATTCAATTTTTCTCATAACAATTTGTCAGGTAAATTTCCAGAATTTTTCCAAGATTTCAAGTCCTTGAAAATTTTGGACCTATCATATAACAATTTT GAGGGGATGGTGCCTGTTAGAGGAGTTTTCAAGAACGCAACAGCAACTTCAGTCATTGGGAATAGCAAGCTATGCGGTGGCACACCTGATTTTGAGCTTC CTCCATGCAATTTCAAACACCCGAAGAGGTTGAGCCTAAAAATGAAGATAACAATCTTTGTGATTTCCTTGCTTCTAGCGGTGGCAGTACTTATCACTGG TTTATTTCTTTTCTGGTCAAGAAAGAAAAGAAGAGAATTCACTCCAAGCTCTGATGGGAATGTGCTATTGAAGGTGTCTTATCAAAGTCTCCTAAAAGCT ACAAATGGATTCTCCTCGATCAATTTAATTGGTACTGGCAGCTTTGGCTCTGTCTATAAAGGAATTCTTGATCATAATGGAACAGCTGTTGCTGTCAAAG TGCTTAACCTAAGGCGTCAAGGAGCTTCTAAGAGTTTCATGGCTGAATGTGAGGCTCTGCGGAACGTCAGACATCGAAATCTAGTTAAGGTAGTGACAGC ATGTTCAGGTGTTGATTATCATGGGAATGATTTCAAGGCTTTGGTGTATGAATTCATGGTTAATGGGAGTTTGGAAACCTGGCTGCATCCAAGTCCTGCA ACAGCTGAGGTGCAGGGGATTCTAGATCTTACACAGAGACTAAACATTGCCATCGATGTTGCCCACGCACTAGACTATCTTCATCATCAATGTGAAAAAC AAATAGTTCACTGTGACCTCAAACCAGGCAATGTTCTTCTCGATGACGATATGGTTGGCCATGTAGGTGATTTTGGGTTAGCAAAATTCCTTCTCGAAGA CACCCTTCACCATTCGATGAATCCATCAAGCTCCATTGGAATAAGAGGGACCATTGGTTATACTCCCCCTGAGTATGGTGCGGGAAACGAAGTGTCAGCA TATGGTGATGTATACAGCTATGGCATACTCTTGCTGGAGATGTTTACAGGGAAGAGACCAACTGATGACCTGTTTAATGGTCTGAACCTTCATAGCTATG TGAAGACATTTTTGCCTGAGAAAGTGTTGCAGATTGCAGATCCTACTCTTCTTCAAATAAAATTTGAAGGGAATTCTATCGAACAAAATAGAGTTCTTGA GTGCTTGGTCTCAGTATTTACAACTGGAATCTCCTGTTCTGTCGAGTCGCCACAGGAACGGATGGGCATTGCTGATGTTATAGCCCAACTATTTTCTGCC AGAAACGAACTTCTTGGAACCTGA
AA sequence Show only first row Show all	>Potri.011G102800.1 pacid=42780838 polypeptide=Potri.011G102800.1.p locus=Potri.011G102800 ID=Potri.011G102800.1.v4.1 annot-version=v4.1 MGFLVPSPVFCPRAIVLLLLCLTSSALSIDRNETDRLALLDFKSKMTRDPLGIMRLWNSSIHFCQWFGVTCSQKHQRVTVLDLRSLKLSGSVSPYIGNLS FLREIYLQNNSFSHEIPAQIGHLHRLQILLLHNNFLTGEIPASISSSYNLVSLKLANNKLIGEIPKEFGSFLKLRNLSLAGNNLTGTIPPSLGNISSLQT LWLNDNKLFGNLPATLSKLVNLRILSLFNNRFSGTIPPSMFNLSSLTAFEVGLNHFHGNLPPDLGISLPNLEFFSIHSNQFTGSVPVSISNLSNLEMLQL NQNKLTGKMPSLEKLQRLLSITIASNNLGSGDANDLSFLSSLTNATNLEELIITQNNFQGQLPPQISNLSTTLEIMGLDSNLLFGSIPDGIENLISLNDF EVQNNHLSGIIPSTIGKLQNLEILDLGLNNFSGHIPSSLGNLTNLIGLYLNDINVQGSIPSSLANCNNLLELDLSGNYISGSIPPEIFVLSSLSINLDLS RNHLSGSLPKEVGNLENLGIFAISGNMISGTIPSSLGHCTSLQVLYLDANFFEGSIPSSLSTLRGIQEFNFSHNNLSGKFPEFFQDFKSLKILDLSYNNF EGMVPVRGVFKNATATSVIGNSKLCGGTPDFELPPCNFKHPKRLSLKMKITIFVISLLLAVAVLITGLFLFWSRKKRREFTPSSDGNVLLKVSYQSLLKA TNGFSSINLIGTGSFGSVYKGILDHNGTAVAVKVLNLRRQGASKSFMAECEALRNVRHRNLVKVVTACSGVDYHGNDFKALVYEFMVNGSLETWLHPSPA TAEVQGILDLTQRLNIAIDVAHALDYLHHQCEKQIVHCDLKPGNVLLDDDMVGHVGDFGLAKFLLEDTLHHSMNPSSSIGIRGTIGYTPPEYGAGNEVSA YGDVYSYGILLLEMFTGKRPTDDLFNGLNLHSYVKTFLPEKVLQIADPTLLQIKFEGNSIEQNRVLECLVSVFTTGISCSVESPQERMGIADVIAQLFSA RNELLGT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.011G102800 [exp]	0	1
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Potri.014G046600 [exp]	3.00	0.9670
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Potri.014G047000 [exp]	4.69	0.9666	ERF7
AT3G52450		PUB22	plant U-box 22 (.1)		Potri.006G202600 [exp]	5.47	0.9489
					Potri.010G127900 [exp]	7.07	0.9113
AT1G71450	AP2_ERF		Integrase-type DNA-binding sup...		Potri.003G054100 [exp]	7.34	0.9489
AT2G28890		PLL4	poltergeist like 4 (.1)		Potri.001G239300 [exp]	7.68	0.9047
AT1G53903			Protein of unknown function (D...		Potri.001G163400 [exp]	7.74	0.9583
AT5G43650	bHLH	BHLH92, bHLH092	basic helix-loop-helix (bHLH) ...		Potri.010G077000 [exp]	7.74	0.9558
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Potri.001G153100 [exp]	8.66	0.9427
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Potri.014G038700 [exp]	9.16	0.9449

Compare expression of checked genes

Potri.011G102800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.