Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 844 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 783 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 766 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 745 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 743 / 0 EFR EF-TU receptor (.1) AT2G24130 469 / 2e-149 Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 460 / 2e-144 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G46330 458 / 3e-143 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 446 / 2e-139 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 447 / 1e-138 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G103000 [exp] 1957 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 1852 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 1255 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 1035 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 986 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 969 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 954 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228300 [exp] 951 / 0 AT3G47570 743 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 950 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004388 [exp] 958 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 950 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 941 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037840 [exp] 940 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 934 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 917 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 913 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038686 [exp] 912 / 0 AT3G47570 752 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 909 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 897 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.011G102900.1 pacid=42780686 polypeptide=Potri.011G102900.1.p locus=Potri.011G102900 ID=Potri.011G102900.1.v4.1 annot-version=v4.1 ATGGGTTTTTTAGTGCCTTCTCCAGTCTTCTGCCCCCATGCCTTTGTTCTTCTCCTCTTGTGTTTCACGTCCTCTGCCTTGTCAATCGGCAGGAATGAGA CCGACCGACTAGCCTTGCTGGATTTCAAGTCCAAAATAACCCATGATCCTCTTGGAATCATGCGCTTGTGGAATAGCAGCATCCACTTCTGCCATTGGTT CGGTGTCACATGCAGTCAGAAGCACCAAAGGGTGGCGGTGCTGGATCTGCAGTCCCTTAAACTGTCAGGTTCCGTATCACCATATATTGGCAATCTGAGC TTTTTAAGAAACCTATACCTTCAACACAACAGCTTCAGTCATGAAATCCCAGCACAAATTGGCCACTTGCATCGATTGCAAATACTAGCACTACATAATA ATTCCTTTACTGGTGAAATTCCTGCTAGTATGTCTAGTTCCTATAACCTCGTTTCACTCATATTAGATAACAACAAGCTGACAGGAGAAATTCCTAAGGA GTTTGGCTCCTTCTTGAAGCTCACAGACCTCTATATAGACGACAACAACCTTCTAGGAACTATCCCTCCATCTTTAGGGAACATATCATCCCTCCAAGAA CTATGGCTAGATGATAATAACTTGTTTGGGAATCTCCCTGCTACTTTAAGCAAATTGGTAAACCTCAGGGTTTTATCATTGTTTAATAATAGATTTTCAG GTACCATACCTCCCTCCATGCTCAATCTCTCTTCATTAAGGACTTTCCAAGTAGGGCTTAACAATTTCCAAGGCAATCTCCCCCCTGATCTGGGCATTTC CCTTCCAAATCTTGAATTCTTTTCCATCTATTCTAACCAATTCACTGGAAGTGTTCCTGTTTCAATATCCAATTTATCAAATCTTGAAATGCTAGGGTTA AACCTAAACAAGCTTACAGGAAAAATGCCTTCACTGGAAAAGCTACAAAGGCTTCTTTCAATAACCATTGCCTCCAACAATCTGGGAAGTGGGGAAGCCA ATGACTTGAGCTTTCTCTCCTCCTTGACCAATGCCACAAACCTAGAGGAATTGATTATAACGCAAAATAACTTTCAAGGACAGCTGCCTCCACAAATCAG CAATCTGTCAACTACACTGGAAATCATGGGCCTAGACAGCAATCTATTATTTGGGAGCATCCCTGATGGAATAGAGAATCTCATCAGCTTGAATGATTTT GAAGTACAAAACAACCACCTTTCAGGTATCATTCCTTCTACCATTGGGAAGCTTCAAAATCTAGAAATATTGGGTCTTGCATTGAATAATTTTTCAGGGG ATATTCCATCCTCTCTAGGAAACCTGACAAACTTAATTGGACTCTATTTAAATGACATCAATGTTCAAGGCAGCATCCCTTCAAGTCTAGCAAATTGCAA CAAATTGTTAGAGTTGGATCTTTCTGGAAACTATATTACCGGTAGCATACCCCCTGGCATATTTGGACTATCCTCCCTGTCAATTAATCTTGATTTATCT CGAAACCATTTGTCTGGCTCCCTACCAAAGGAAGTAGGAAATTTGGAAAATCTAGAAATTTTTGCTATTTCTGGGAATATGATATCAGGCAAGATTCCTA GTAGTCTTGCACAGTGTATAAGTCTGCAATTCTTGTACTTGGATGCCAACTTTTTTGAAGGTTCCGTCCCTTCCTCCTTGAGTACCCTGAGAGGCATTCA GGAATTCAATTTTTCTCATAACAATTTGTCAGGGAAAATTCATGAATTTTTCCAAGATTTCAGGTCCTTGGAAATTTTGGACCTATCTTATAATAATTTT GAAGGGATGGTACCTTTTAGAGGAATTTTCAAGAACGCAACAGCAACTTCAGTCATTGGGAATAGCAAGCTATGCGGTGGCACACCTGATTTTGAGCTTC CTCCATGCAATTTCAAACACCCGAAGAGGTTGAGCCTAAAAATGAAGATAACAATCTTTGTGATTTCCCTGCTTCTAGCGGTGGCAGTACTTATCACTGG TTTATTTCTTTTCTGGTCAAGAAAGAAAAGAAGAGAATTCACTCCAAGCTCTGATGGGAATGTGCTATTGAAGGTGTCTTATCAAAGTCTCCTAAAAGCT ACAAATGGATTCTCCTCGATCAATTTAATTGGTACTGGCAGCTTTGGCTCTGTCTATAAAGGAATTCTTGATCATAATGGAACAGCTGTTGCTGTCAAAG TGCTTAACCTAAGGCGTCAAGGAGCTTCTAAGAGTTTCATGGCTGAATGTGAGGCTCTGCCGAACGTCAGACATCGAAATCTAGTTAAGGTAGTGACAGC ATGTTCAGGTGTTGATTATCATGGGAATGATTTCAAGGCTTTGGTGTATGAATTCATGGTTAATGGGAGTTTGGAAACCTGGCTGCATCCAAGTCGTGCA ACAGATGAGGTGCGGGGGATTCTAGATCTTACACAGAGACTAAGCATTGCCATCGATGTTGCCCACGCACTAGACTATTTTCATCATCAATGTGAAAAAC AAATAGTTCACTGTGACCTCAAACCAGGCAATGTTCTTCTCGATGACGAAATGGTTGGCCATGTAGGTGATTTTGGGTTAGCAAAATTCCTTCTCGAAGA CACCCTTCACCATTCGACGAACCCATCAAGCTCCATTGGAATAAGAGGGACCATTGGTTATACTCCCCCTGAGTATGGTGCGGGAAACGAAGTGTCAGCA TATGGTGATGTATACAGCTATGGCATACTCTTGCTGGAGATGTTTACAGGAAAGAGACCAACTGATGACCTGTTTAATGGTCTGAACCTTCATAGCTATG TCAAGACATTTTTGCCTGAGAAAGTGTTGCAGATTGCAGATCCTACTCTTCCTCAAATAAATTTTGAAGGGAATTCTATCGAACAAAATAGAGTTCTTCA GTGCCTGGTCTCAGTATTTACAACTGGAATCTCCTGTTCTGTCGAGTCGCCACAGGAACGGATGGGCATTGCTGATGTTATAGCCCAACTATTTTCTGCC AGAAACGAACTTCTTGGAACCTGA
AA sequence Show only first row Show all	>Potri.011G102900.1 pacid=42780686 polypeptide=Potri.011G102900.1.p locus=Potri.011G102900 ID=Potri.011G102900.1.v4.1 annot-version=v4.1 MGFLVPSPVFCPHAFVLLLLCFTSSALSIGRNETDRLALLDFKSKITHDPLGIMRLWNSSIHFCHWFGVTCSQKHQRVAVLDLQSLKLSGSVSPYIGNLS FLRNLYLQHNSFSHEIPAQIGHLHRLQILALHNNSFTGEIPASMSSSYNLVSLILDNNKLTGEIPKEFGSFLKLTDLYIDDNNLLGTIPPSLGNISSLQE LWLDDNNLFGNLPATLSKLVNLRVLSLFNNRFSGTIPPSMLNLSSLRTFQVGLNNFQGNLPPDLGISLPNLEFFSIYSNQFTGSVPVSISNLSNLEMLGL NLNKLTGKMPSLEKLQRLLSITIASNNLGSGEANDLSFLSSLTNATNLEELIITQNNFQGQLPPQISNLSTTLEIMGLDSNLLFGSIPDGIENLISLNDF EVQNNHLSGIIPSTIGKLQNLEILGLALNNFSGDIPSSLGNLTNLIGLYLNDINVQGSIPSSLANCNKLLELDLSGNYITGSIPPGIFGLSSLSINLDLS RNHLSGSLPKEVGNLENLEIFAISGNMISGKIPSSLAQCISLQFLYLDANFFEGSVPSSLSTLRGIQEFNFSHNNLSGKIHEFFQDFRSLEILDLSYNNF EGMVPFRGIFKNATATSVIGNSKLCGGTPDFELPPCNFKHPKRLSLKMKITIFVISLLLAVAVLITGLFLFWSRKKRREFTPSSDGNVLLKVSYQSLLKA TNGFSSINLIGTGSFGSVYKGILDHNGTAVAVKVLNLRRQGASKSFMAECEALPNVRHRNLVKVVTACSGVDYHGNDFKALVYEFMVNGSLETWLHPSRA TDEVRGILDLTQRLSIAIDVAHALDYFHHQCEKQIVHCDLKPGNVLLDDEMVGHVGDFGLAKFLLEDTLHHSTNPSSSIGIRGTIGYTPPEYGAGNEVSA YGDVYSYGILLLEMFTGKRPTDDLFNGLNLHSYVKTFLPEKVLQIADPTLPQINFEGNSIEQNRVLQCLVSVFTTGISCSVESPQERMGIADVIAQLFSA RNELLGT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.011G102900 [exp]	0	1
AT4G24380			unknown protein		Potri.002G102500 [exp]	10.77	0.7328
AT3G19130		ATRBP47B	RNA-binding protein 47B (.1)		Potri.004G143400 [exp]	12.00	0.6749
					Potri.001G141900 [exp]	22.71	0.7396
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Potri.011G103600 [exp]	25.47	0.7032
AT4G23330			unknown protein		Potri.003G127900 [exp]	29.54	0.7352
AT3G47570			Leucine-rich repeat protein ki...		Potri.006G099100 [exp]	30.14	0.7088
AT4G18380			F-box family protein (.1.2)		Potri.009G047600 [exp]	38.88	0.7021
AT1G48540			Outer arm dynein light chain 1...		Potri.015G036300 [exp]	42.50	0.7005
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Potri.015G136400 [exp]	45.98	0.6466
AT4G34320			Protein of unknown function (D...		Potri.009G112430 [exp]	47.01	0.6864

Compare expression of checked genes

Potri.011G102900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.