Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 827 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 763 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 750 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 737 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 731 / 0 EFR EF-TU receptor (.1) AT2G24130 466 / 5e-148 Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 444 / 2e-138 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17230 438 / 3e-136 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 440 / 8e-136 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G08850 434 / 2e-135 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G102900 [exp] 1925 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 1830 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 1248 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 1025 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 978 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 955 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 949 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 941 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228300 [exp] 926 / 0 AT3G47570 743 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004388 [exp] 948 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 942 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 938 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037840 [exp] 936 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 931 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 912 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038686 [exp] 911 / 0 AT3G47570 752 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 900 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 900 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011388 [exp] 890 / 0 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.011G103000.2 pacid=42780467 polypeptide=Potri.011G103000.2.p locus=Potri.011G103000 ID=Potri.011G103000.2.v4.1 annot-version=v4.1 ATGGGTTTTTTAGTGCCTTCTCCAGTCTTCTGCCCCCATGCCTTTGTTCTTCTCCTCTTGTGTTTCACGTCCTCTGCCTTGTCAATCGGCAGGAATGAGA CCGACCGACTAGCCTTGCTGGATTTCAAGTCCAAAATAACCCATGATCCTCTTGGAATCATGCGCTTGTGGAATAGCAGCATCCACTTCTGCCAGTGGTT CGGTGTCACATGCAGTCAGAAGCACCAAAGGGTGGCGGTGCTGGATCTGCAGTCCCTTAAACTGTCAGGTTCCGTATCACCATATATTGGCAATCTGAGC TTTTTAAGAAACCTATACCTTCAACACAACAGCTTCAGTCATGAAATCCCAGCACAAATTGGCCACTTGCATCGATTGCAAATACTAGCACTACATAATA ATTCCTTTACTGGTGAAATTCCTGCTAGTATGTCTAGTTCCTATAACCTCGTTTCACTCATATTAGATAACAACAAGCTGACAGGAGAAATTCCTAAGGA GTTTGGCTCCTTCTTGAAGCTCACAGACCTCTATATAGACGACAACAACCTTGTAGGAACTATTCCTCCATCTTTAGGGAACATATCATCCCTCCAAGAA CTATGGCTAGATGATAATAACTTGTTTGGGAATCTCCCTGCTACTTTAAGCAAATTGGTAAACCTCAGGGTTTTATCATTGTTTAATAATAGATTTTCAG GTACCATACCTCCCTCCATGCTCAATCTCTCTTCATTAAGGACTTTCCAAGTAGGGCTTAACCATTTCCAAGGCAATCTCCCCCCTGATCTGGGCATTTC CCTTCCAAATCTTGAATTCTTTTCCATCTATTCTAACCAATTCACTGGAAGTGTTCCTGTTTCAATATCCAATTTATCAAATCTTGAAATGCTAGAGTTA AACCTAAACAAGCTTAGAGGAAAAATGCCTTCACTGGAAAAGCTACAAAGGCTTCTTTCAATAACCATTGCCTCCAACAATTTGGGAAGTGGGGAAGCCA ATGACTTGAGCTTTCTCTCCTCTTTGACCAATGCCACAAACCTACAGCGCTTGATTATAACGCAAAATAACTTTCAAGGACAGCTGCCTCCACAAATCAG CAATTTGTCAACTACACTGGAAATCATGGGCCTAGACAGCAATCTATTATTTGGGAGCATCCCTGATGGAATAGAGAATCTCATCAGCTTGAATGATTTT GAAGTACAAAACAACCACCTTTCAGGTATCATTCCTTCTACCATTGGGAAGCTTCAAAATCTAGAAATATTGGGTCTTGCATTGAATAATTTTTCAGGGC ATATTCCATCCTCTCTAGGAAACCTGACAAAGTTAATTGGACTCTATTTAAATGACATCAATGTTCAAGGCAGCATCCCTTCAAGTCTAGCAAATTGCAA CAAATTGTTAGAGTTGGATCTTTCTGGAAACTATATTACCGGTAGCATGCCCCCTGGCATATTTGGACTATCCTCCCTGACAATTAATCTTGATTTATCT CGAAACCATTTGTCTGGCTCCCTACCAAAGGAAGTAGGAAATTTGGAAAATCTAGAAATTTTTGCTATTTCTGGGAATATGATATCAGGTAAGATTCCTA GTAGTCTTGCACACTGTATAAGTCTGCAATTCTTGTACTTGGATGCCAACTTTTTTGAAGGTTCCGTCCCTTCCTCCTTGAGTACCCTGAGAGGCATTCA AGAATTCAATTTTTCTCATAACAATTTGTCAGGGAAAATTCCAGAATTTTTCCAAGATTTCAGGTCCTTGGAAATTTTGGACCTATCTTATAATAATTTT GAAGGGATGGTACCTTTTAGAGGAATTTTCAAGAACGCAACAGCAACTTCAGTCATTGGGAATAGCAAGCTATGCGGTGGCACACCTGATTTTGAGCTTC CTCCATGCAATTTCAAACACCCGAAGAGGTTGAGCCTAAAAATGAAGATAACAATCTTTGTGATTTCCTTGCTTCTAGCGGTGGCAGTACTTATCACTGG TTTATTTCTTTTCTGGTCAAGAAAGAAAAGAAGAGAATTCACTCCAAGCTCTGATGGGAATGTGCTATTGAAGGTGTCTTATCAAAGTCTCCTAAAAGCT ACAAATGGATTCTCCTCGATCAATTTAATTGGTACTGGCAGCTTTGGCTCTGTCTATAAAGGAACTCTTGATCATAATGGAATAGCTGTTGCAGTCAAAG TGCTTAACCTAACGCGTCAAGGAGCTTCTAAGAGTTTCATGGCTGAATGTGAGGCTCTGCGGAACGTCAGACATCGAAATCTAGTTAAGGTAGTGACAGC ATGTTCAGGTGTTGATTATCATGGGAATGATTTCAAGGCTTTGGTGTATGAATTCATGGTTAATGGGAGTTTGGAAACCTGGCTGCATCCAAGTCCTGCA ACAGATGAGGTGCGGGGGATTCTAGATCTTTCGCAGAGACTAAACATTGCCATCGATGTTGCCCACGCACTTGACTATCTTCATCATCAATGTGAAAAAC AAATAGTTCACTGTGACCTCAAACCAGGCAATGTTCTTCTCGATGACGAAATGGTTGGCCATGTTGGTGATTTTGGGTTAGCAAAATTCCTTCTCGAAGA CACCCTTCACCATTCGACGAACCCATCAAGCTCCATTGGAATAAGAGGGACCATTGGTTATGCTCCCCCTGAGTATGGTGCGGGAAACGAAGTGTCAGCA TACGGTGATGTATACAGCTATGGCATACTCTTGCTGGAGATGTTTACAGGAAAGAGACCAACTGATGACCTGTTTAATGGTCTGAACCTTCATAGCTATG TCAAGACATTTTTGCCTGAGAAAGTGTTGCAGATTGCAGATCCTACTCTTCCTCAAATAAATTTTGAAGGGAATTCTATCGAACAAAATAGAGTTCTTGA GTGCTTGGTCTCAGTATTTACAACTGGAATCTCCTGTTCTGTCGAGTCGCCACAGGAACGGATGGGCATTGCTGATGTTATAGCCCAACTATTTTCTGCC AGAAACGAACTTCTTGGAACCTGA
AA sequence Show only first row Show all	>Potri.011G103000.2 pacid=42780467 polypeptide=Potri.011G103000.2.p locus=Potri.011G103000 ID=Potri.011G103000.2.v4.1 annot-version=v4.1 MGFLVPSPVFCPHAFVLLLLCFTSSALSIGRNETDRLALLDFKSKITHDPLGIMRLWNSSIHFCQWFGVTCSQKHQRVAVLDLQSLKLSGSVSPYIGNLS FLRNLYLQHNSFSHEIPAQIGHLHRLQILALHNNSFTGEIPASMSSSYNLVSLILDNNKLTGEIPKEFGSFLKLTDLYIDDNNLVGTIPPSLGNISSLQE LWLDDNNLFGNLPATLSKLVNLRVLSLFNNRFSGTIPPSMLNLSSLRTFQVGLNHFQGNLPPDLGISLPNLEFFSIYSNQFTGSVPVSISNLSNLEMLEL NLNKLRGKMPSLEKLQRLLSITIASNNLGSGEANDLSFLSSLTNATNLQRLIITQNNFQGQLPPQISNLSTTLEIMGLDSNLLFGSIPDGIENLISLNDF EVQNNHLSGIIPSTIGKLQNLEILGLALNNFSGHIPSSLGNLTKLIGLYLNDINVQGSIPSSLANCNKLLELDLSGNYITGSMPPGIFGLSSLTINLDLS RNHLSGSLPKEVGNLENLEIFAISGNMISGKIPSSLAHCISLQFLYLDANFFEGSVPSSLSTLRGIQEFNFSHNNLSGKIPEFFQDFRSLEILDLSYNNF EGMVPFRGIFKNATATSVIGNSKLCGGTPDFELPPCNFKHPKRLSLKMKITIFVISLLLAVAVLITGLFLFWSRKKRREFTPSSDGNVLLKVSYQSLLKA TNGFSSINLIGTGSFGSVYKGTLDHNGIAVAVKVLNLTRQGASKSFMAECEALRNVRHRNLVKVVTACSGVDYHGNDFKALVYEFMVNGSLETWLHPSPA TDEVRGILDLSQRLNIAIDVAHALDYLHHQCEKQIVHCDLKPGNVLLDDEMVGHVGDFGLAKFLLEDTLHHSTNPSSSIGIRGTIGYAPPEYGAGNEVSA YGDVYSYGILLLEMFTGKRPTDDLFNGLNLHSYVKTFLPEKVLQIADPTLPQINFEGNSIEQNRVLECLVSVFTTGISCSVESPQERMGIADVIAQLFSA RNELLGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.011G103000 [exp]	0	1
AT5G51440			HSP20-like chaperones superfam...		Potri.006G034600 [exp]	5.83	0.7850
AT1G10020			Protein of unknown function (D...		Potri.005G150100 [exp]	12.24	0.7310
AT3G12630		SAP5	stress associated protein 5, A...		Potri.009G063900 [exp]	17.83	0.7661
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.009G078500 [exp]	20.09	0.7491
AT5G57123			unknown protein		Potri.006G073400 [exp]	25.57	0.7572
AT1G65610		ATGH9A2 ,KOR2	KORRIGAN 2, ARABIDOPSIS THALIA...		Potri.010G177300 [exp]	27.85	0.6788
AT5G17680			disease resistance protein (TI...		Potri.019G002500 [exp]	59.92	0.6990
AT2G40000		ATHSPRO2	ARABIDOPSIS ORTHOLOG OF SUGAR ...		Potri.008G066000 [exp]	62.99	0.7276
					Potri.012G096050 [exp]	65.96	0.6661
					Potri.019G023500 [exp]	67.34	0.6887

Compare expression of checked genes

Potri.011G103000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.