Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14740 339 / 1e-115 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT2G31650 100 / 4e-23 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT1G05830 93 / 2e-20 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT3G61740 89 / 5e-19 SDG14, ATX3 SET domain protein 14 (.1.2) AT5G53430 87 / 1e-18 SET29, ATX5, SDG29 SET domain group 29 (.1) AT4G27910 84 / 2e-17 SDG16, ATX4 SET domain protein 16 (.1) AT1G77800 70 / 9e-13 PHD finger family protein (.1.2) AT3G01460 49 / 4e-06 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT1G50620 45 / 6e-05 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G58610 45 / 6e-05 PHD finger transcription factor, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G382500 [exp] 523 / 0 AT3G14740 338 / 3e-115 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.014G098400 [exp] 93 / 2e-20 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2) Potri.014G146300 [exp] 93 / 2e-20 AT1G05830 1273 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.002G232800 [exp] 91 / 6e-20 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.005G171800 [exp] 88 / 7e-19 AT1G77800 522 / 2e-160 PHD finger family protein (.1.2) Potri.002G170600 [exp] 88 / 9e-19 AT3G61740 1140 / 0.0 SET domain protein 14 (.1.2) Potri.002G089400 [exp] 88 / 1e-18 AT1G77800 939 / 0.0 PHD finger family protein (.1.2) Potri.012G013900 [exp] 86 / 4e-18 AT5G53430 1423 / 0.0 SET domain group 29 (.1) Potri.015G014300 [exp] 84 / 2e-17 AT5G53430 1322 / 0.0 SET domain group 29 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038142 [exp] 347 / 3e-119 AT3G14740 315 / 1e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10042494 [exp] 254 / 4e-85 AT3G14740 224 / 1e-73 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10026725 [exp] 91 / 1e-19 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10025508 [exp] 91 / 2e-19 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10024777 [exp] 80 / 4e-16 AT1G77800 385 / 7e-120 PHD finger family protein (.1.2) Lus10019026 [exp] 72 / 1e-13 AT4G27910 1171 / 0.0 SET domain protein 16 (.1) Lus10012626 [exp] 67 / 8e-12 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2) Lus10010121 [exp] 67 / 9e-12 AT3G61740 1008 / 0.0 SET domain protein 14 (.1.2) Lus10009785 [exp] 65 / 5e-11 AT1G77800 388 / 3e-115 PHD finger family protein (.1.2) Lus10024778 [exp] 50 / 3e-06 AT1G77800 533 / 6e-174 PHD finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0390 [poplar] [flax] zf-FYVE-PHD PF13832 [poplar] [flax] zf-HC5HC2H_2 PHD-zinc-finger like domain
Representative CDS sequence Show only first row Show all	>Potri.011G103100.1 pacid=42780385 polypeptide=Potri.011G103100.1.p locus=Potri.011G103100 ID=Potri.011G103100.1.v4.1 annot-version=v4.1 ATGGATACCAAATTCCAAGCCTTACCTCCTTTCAAAAGGCACACCCTCTTAGAACAGCAACAGCAACAAGAAAACGAAGAAAATGTGCCCTTCTCCTCGC AATTGCCGGCCAAGAAGCGAAAGGAGTCCCGGAACCCACTTCTTGCGGATGCTGATCCCAAAGGCACTACTAGTGCTGCGTACTGCTTGCCAACCAAGAA GAGGGTTTGGGCACTGCATCCTGATTTAGTTTCCGGTAAGCCTCTTTCGCCGCTAATCGATCTCAACGTTGAGTATATTCCTTCTTCTAATGAAGAAATT AAAGCAGATGAGGAAAACAAGAAAACCCCTCTTCCAATTATTAATAAGTCAATTGATAGTTTACAACAAGAGGAGAAAGTCACATTTCTTTATGAAAACA ATCAACAAGAGTATAAGGAGGAAGAGGATGATGGTATTTTGTGTGCTATTTGTCAAAGCACAGATGGGGATCCAACAGATCCTATAGTGTTTTGTGACGG GTGCGATTTAATGGTTCACACTACTTGCTATGGCAATCCTTTAATAAAGGGTGTTCCTGATGGTGATTGGTTCTGTAGTCAGTGTTTGGCTTCTAAATCC GACAAAGAAACTAAGCAACCATCCTTATCTTGTTGCTTGTGTCCAATAAAGGGTGGTGCTTTGAAACCCACCGCAACAATTGGCCGTGATGAGTCATGGG CTCATATTGTGTGCGCACTTTTGATTCCTGAGGTGTTTTTTGAAGATCCAGATGGCCGTGAAGGAATTGTTTATTCTAAGGTTCCTAAAAGGAGATGGGA AGAGAAATGTTATGTTTGCAAGAGTAGAAAAGGGTGTGTTATTGACTGCTCTGAGCCTAAGTGTCCTCTGGCATTTCATGTTACTTGTGGGTTGAATGAG GATGTTTATATCGAGTATAAAGAAGGGAAGAAGAAGGAGACTATAGTTGCTGGCTTCTGCAAAAGACACACTGAATTATGGGATAAGCAACAACAGACAG GGAAGTTCAAGATTGTTGCTAGAGAAGAGCACAGAAAATAA
AA sequence Show only first row Show all	>Potri.011G103100.1 pacid=42780385 polypeptide=Potri.011G103100.1.p locus=Potri.011G103100 ID=Potri.011G103100.1.v4.1 annot-version=v4.1 MDTKFQALPPFKRHTLLEQQQQQENEENVPFSSQLPAKKRKESRNPLLADADPKGTTSAAYCLPTKKRVWALHPDLVSGKPLSPLIDLNVEYIPSSNEEI KADEENKKTPLPIINKSIDSLQQEEKVTFLYENNQQEYKEEEDDGILCAICQSTDGDPTDPIVFCDGCDLMVHTTCYGNPLIKGVPDGDWFCSQCLASKS DKETKQPSLSCCLCPIKGGALKPTATIGRDESWAHIVCALLIPEVFFEDPDGREGIVYSKVPKRRWEEKCYVCKSRKGCVIDCSEPKCPLAFHVTCGLNE DVYIEYKEGKKKETIVAGFCKRHTELWDKQQQTGKFKIVAREEHRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14740			RING/FYVE/PHD zinc finger supe...		Potri.011G103100 [exp]	0	1
AT5G59970			Histone superfamily protein (....		Potri.007G013500 [exp]	1.00	0.9273	HFO909
AT4G15790			unknown protein		Potri.010G024600 [exp]	1.41	0.9271
AT1G06475			unknown protein		Potri.002G058400 [exp]	1.73	0.9204
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Potri.012G060000 [exp]	2.23	0.9176	Pt-MSH2.1
AT5G07900			Mitochondrial transcription te...		Potri.001G034900 [exp]	3.46	0.8861
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.010G197200 [exp]	4.47	0.8981
AT4G21070		ATBRCA1	ARABIDOPSIS THALIANA BREAST CA...		Potri.001G358100 [exp]	5.65	0.9003	Pt-ATBRCA1.1
AT1G09815		POLD4	polymerase delta 4 (.1)		Potri.013G076400 [exp]	5.74	0.8885
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Potri.014G085900 [exp]	6.00	0.8995
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Potri.002G121500 [exp]	6.00	0.9035	CYCA3.1

Compare expression of checked genes

Potri.011G103100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.