Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14760 120 / 7e-35 unknown protein AT1G71740 45 / 3e-06 unknown protein AT1G49000 45 / 4e-06 unknown protein AT3G18560 44 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G382800 [exp] 285 / 2e-99 AT3G14760 109 / 3e-30 unknown protein Potri.010G130600 [exp] 50 / 5e-08 AT1G49000 77 / 2e-18 unknown protein Potri.005G198200 [exp] 44 / 7e-06 AT1G71740 112 / 5e-33 unknown protein Potri.017G128700 [exp] 42 / 6e-05 AT3G18560 48 / 3e-07 unknown protein Potri.012G059500 [exp] 41 / 0.0001 AT1G49000 111 / 1e-31 unknown protein Potri.004G088300 [exp] 40 / 0.0002 AT1G49000 50 / 4e-08 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042496 [exp] 75 / 3e-16 AT3G14760 65 / 1e-12 unknown protein Lus10038145 [exp] 73 / 1e-15 AT3G14760 70 / 1e-14 unknown protein Lus10029742 [exp] 50 / 8e-08 AT1G71740 82 / 5e-21 unknown protein Lus10034266 [exp] 48 / 5e-07 AT1G71740 53 / 4e-09 unknown protein Lus10041497 [exp] 48 / 7e-07 AT1G71740 51 / 2e-08 unknown protein Lus10042773 [exp] 47 / 8e-07 AT1G71740 81 / 8e-21 unknown protein Lus10032453 [exp] 43 / 7e-05 AT1G49000 70 / 1e-14 unknown protein Lus10042953 [exp] 42 / 0.0001 AT1G49000 67 / 8e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G103500.1 pacid=42782097 polypeptide=Potri.011G103500.1.p locus=Potri.011G103500 ID=Potri.011G103500.1.v4.1 annot-version=v4.1 ATGGAAGCATTGTGGAATTTGGAGGACGAATGGAAGCTGACAACCCAAGAAGCAGTTCTCTTATTTGTTTGCACAGCCCTTGCAGTCATTGCGCTTTGCG CTGCAATCATGCTTAAGAGGAAGGCCCAAACAAAGCAAAGATCAGTGAACCAAGACCCAAGCACAGGTAGCTCAAAACGGTGGTCTGAGCCCGAGCCTGG CTCTAACAATTGGATCACAATAAGGAGGGTGTTGATGGAGTCAATGAGGTGGAGTGGAGCAAGCAAATGGGATGAGGGAAGTAGCGGGAGTGGCAGTGGC AGTGGGATGCTGCTGCCACCACCGGTTCTTGGGTTAGAAAGGTGCGAGTCAAGTATGGGGTGGCAAAGCCCTGACTCTTTGTCAGCAGTGTGGCAAAGGC CTATACTAATGGGAGAGAAATGTGAGCTTCCAAGGTATAGTGGTCTTATTCTCTATGATGAAAGAGGGCGGCTACTTGATCATTCTCTCACATCTTCTCG TAAAGAAAATATTCACGAGGAAAAACCAGCAGCTGTTCTGAGAACTACTCTGAAGGATTTGCTATTGCCGTAG
AA sequence Show only first row Show all	>Potri.011G103500.1 pacid=42782097 polypeptide=Potri.011G103500.1.p locus=Potri.011G103500 ID=Potri.011G103500.1.v4.1 annot-version=v4.1 MEALWNLEDEWKLTTQEAVLLFVCTALAVIALCAAIMLKRKAQTKQRSVNQDPSTGSSKRWSEPEPGSNNWITIRRVLMESMRWSGASKWDEGSSGSGSG SGMLLPPPVLGLERCESSMGWQSPDSLSAVWQRPILMGEKCELPRYSGLILYDERGRLLDHSLTSSRKENIHEEKPAAVLRTTLKDLLLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14760			unknown protein		Potri.011G103500 [exp]	0	1
AT3G22470			Pentatricopeptide repeat (PPR)...		Potri.013G034400 [exp]	2.64	0.8944
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.005G192000 [exp]	3.46	0.8926
AT1G03670			ankyrin repeat family protein ...		Potri.018G077250 [exp]	5.91	0.8874
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072300 [exp]	8.12	0.8640
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Potri.007G017800 [exp]	8.36	0.8795
AT5G27730			Protein of unknown function (D...		Potri.013G016900 [exp]	9.48	0.8879
AT1G03670			ankyrin repeat family protein ...		Potri.018G078450 [exp]	10.39	0.8878
AT4G38470		STY46	serine/threonine/tyrosine kina...		Potri.009G139400 [exp]	10.95	0.8417
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Potri.002G229900 [exp]	11.40	0.8509	GLR3.3
AT3G06880			Transducin/WD40 repeat-like su...		Potri.012G118600 [exp]	12.24	0.8647

Compare expression of checked genes

Potri.011G103500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.